View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_low_53 (Length: 307)

Name: NF18936_low_53
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_low_53
NF18936_low_53
[»] chr4 (4 HSPs)
chr4 (30-293)||(23631101-23631364)
chr4 (57-236)||(26468220-26468397)
chr4 (54-165)||(18899674-18899785)
chr4 (62-165)||(6585592-6585695)
[»] chr7 (3 HSPs)
chr7 (60-234)||(43063489-43063661)
chr7 (54-186)||(36331920-36332051)
chr7 (54-156)||(26248566-26248671)
[»] chr1 (5 HSPs)
chr1 (54-165)||(27316953-27317064)
chr1 (57-156)||(14603847-14603946)
chr1 (57-114)||(32808452-32808509)
chr1 (163-234)||(14604041-14604112)
chr1 (143-192)||(27418102-27418151)
[»] chr2 (7 HSPs)
chr2 (54-236)||(13494414-13494595)
chr2 (54-192)||(16422970-16423116)
chr2 (54-227)||(17842284-17842465)
chr2 (54-111)||(26539435-26539492)
chr2 (54-114)||(16243940-16244000)
chr2 (204-236)||(16243665-16243697)
chr2 (204-236)||(16423157-16423189)
[»] chr3 (1 HSPs)
chr3 (54-170)||(10936628-10936744)
[»] chr5 (1 HSPs)
chr5 (71-169)||(18773276-18773374)
[»] chr6 (1 HSPs)
chr6 (54-149)||(11320200-11320295)
[»] scaffold1457 (1 HSPs)
scaffold1457 (78-188)||(1671-1780)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 30 - 293
Target Start/End: Complemental strand, 23631364 - 23631101
Alignment:
Q  30 atagatgtaaacaaagcggatgacaatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtacc 129  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  23631364 atagatgtaaacaaagcggttgaaaatttgagtaaataatgaagaattaattggtcatgaagtaccatattttagttcaattgagaaaaaataatgtacc 23631265  T
Q  130 ttcataattatttatgttatcatatatcatttgttattttagagatgcaggttatttgtgtgaacctcaacattaatgtgtttgattgaggtcaatgatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23631264 ttcataattatttatgttatcatatatcatttgttattttagagatgcatgttatttgtgtgaacctcaacattaatgtgtttgattgaggtcaatgatt 23631165  T
Q  230 gaacacaccttgtggttgtcttccagaagaatgaatccaacaatctttatgaatgtatatcatg 293  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  23631164 gaacacatcttgtggttgtcttcgagaagaatgaatgcaacaatctttatgaatgtatatcatg 23631101  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 57 - 236
Target Start/End: Complemental strand, 26468397 - 26468220
Alignment:
Q  57 ttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcatatat 156  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |  | ||||||||||||| ||||||| |||||||| |||||||    
T  26468397 ttgagtaaataatgaagaactaattggtcatgaagtaccatattttagttcaattgtgggacaataatgtaccttgataatta-ttatgttaccatatat 26468299  T
Q  157 catttgttattttagagatgcaggttatttgtgtgaacctcaacattaatgtgtttgattgaggtcaatgattgaacaca 236  Q
     ||||||||||||||| ||||   |||||||| ||  |||||||||||| ||||||||||| |||| |||||||||||||    
T  26468298 tatttgttattttagatatgcgtattatttgtttg-tcctcaacattaacgtgtttgattgtggtctatgattgaacaca 26468220  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 18899785 - 18899674
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattga-gaaagaataatgtaccttcataattatttatgttatcat 152  Q
    ||||||||||||||||||||||  |||||||| |||| |||||||||||||||||||||| | ||| |||||||| ||| ||||||||| ||||||| ||    
T  18899785 aatttgagtaaataatgaagaacaaattggtcctgaaataccatattttagttcaattgatggaag-ataatgtatcttgataattattcatgttatgat 18899687  T
Q  153 atatcatttgtta 165  Q
    |||| ||||||||    
T  18899686 atattatttgtta 18899674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 6585695 - 6585592
Alignment:
Q  62 taaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcatatatcattt 161  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||||| ||||| | ||||||||| |||  ||| | || ||||||| |||||| ||||    
T  6585695 taaataatgaagaactaattggtcctgaagtaccaaattttagttcaactgagacataataatgtaacttgctaaatgttcatgttatgatatattattt 6585596  T
Q  162 gtta 165  Q
    ||||    
T  6585595 gtta 6585592  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 234
Target Start/End: Original strand, 43063489 - 43063661
Alignment:
Q  60 agtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcatatatcat 159  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||  || ||||||||||||| | | |||||  ||||||||||||| ||    
T  43063489 agtaaataatgaagaactaatttgtcttgaagtatcatattttagttcaattgacgaataataatgtaccttgaaagttattcttgttatcatatattat 43063588  T
Q  160 ttgttattttagagatgcaggttatttgtgtgaacctcaacattaatgtgtttgattgaggtcaatgattgaaca 234  Q
    ||||||||||||| ||  ||||||||| | ||| |||||||| |||| | |||| |||||||| |||||||||||    
T  43063589 ttgttattttagatattaaggttattt-tctgatcctcaacactaatat-tttggttgaggtctatgattgaaca 43063661  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 36332051 - 36331920
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcata 153  Q
    |||||||||||||||| ||||| ||||| |||   |||||||||||| ||||| |||||||  | || |||||||||||||||||||| |||||||||||    
T  36332051 aatttgagtaaataataaagaactaattagtccaaaagtaccatattgtagtt-aattgagggataacaatgtaccttcataattattcatgttatcata 36331953  T
Q  154 tatcatttgttattttagagatgcaggttattt 186  Q
    ||| ||||||||||||||| |||  ||||||||    
T  36331952 tattatttgttattttagatatgttggttattt 36331920  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 26248566 - 26248671
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaat---tgagaaagaataatgtaccttcataattatttatgttatc 150  Q
    |||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||   | ||| |  ||||||||||||  ||| ||||||||||||     
T  26248566 aatttgagtaaataatgaagaactaattggtcctaaagtacgatattttagttcaatcgatcagacacgataatgtaccttgctaactatttatgttatg 26248665  T
Q  151 atatat 156  Q
    ||||||    
T  26248666 atatat 26248671  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 27316953 - 27317064
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcata 153  Q
    ||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| | ||||||||||||| |||| |||| ||||||| |||    
T  27316953 aattttagtaaataatgaagaactaattggtcctgaagtaccatactttagttcaattgagatacaataatgtaccttgataactattcatgttatgata 27317052  T
Q  154 tatcatttgtta 165  Q
    || |||||||||    
T  27317053 taacatttgtta 27317064  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 14603847 - 14603946
Alignment:
Q  57 ttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcatatat 156  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||| |||||   | |||||| || ||| ||||||||| ||||||||||||||    
T  14603847 ttgagtaaataatgaaaaactaattggtcttgaagtaccatattttagttcgattgacggaaaataatataacttgataattattcatgttatcatatat 14603946  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 32808452 - 32808509
Alignment:
Q  57 ttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgag 114  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  32808452 ttgattaaataatgaagaactaattggtcttgaaataccatattttagtttaattgag 32808509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 14604041 - 14604112
Alignment:
Q  163 ttattttagagatgcaggttatttgtgtgaacctcaacattaatgtgtttgattgaggtcaatgattgaaca 234  Q
    |||| ||||| ||||||||||||||| ||  | |||||||||||||||||||||||| || || ||||||||    
T  14604041 ttatattagatatgcaggttatttgtttgttcttcaacattaatgtgtttgattgagttctattattgaaca 14604112  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 27418151 - 27418102
Alignment:
Q  143 atgttatcatatatcatttgttattttagagatgcaggttatttgtgtga 192  Q
    ||||||| |||||| ||||||||| ||||| ||||| |||||||||||||    
T  27418151 atgttatgatatattatttgttatattagaaatgcatgttatttgtgtga 27418102  T

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Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 13494414 - 13494595
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcata 153  Q
    |||| |||||||| |||||||| || |||||  | || ||||||||| || || |||| |   | ||||||||||||| ||||||||| |||||||||||    
T  13494414 aattcgagtaaattatgaagaactagttggttctaaaataccatattgtattttaattaaaggacaataatgtaccttgataattattcatgttatcata 13494513  T
Q  154 tatcatttgttattttagagatgcaggttatttgtgtgaacctcaacattaatgtgtttgattgaggtcaatgattgaacaca 236  Q
    ||| |||| |||||||||| ||||| ||||||||| ||| |||||| ||||||||| |||||||||||  |||||||||||||    
T  13494514 tattattt-ttattttagatatgcatgttatttgtttgatcctcaatattaatgtgcttgattgaggtttatgattgaacaca 13494595  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 16422970 - 16423116
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcata 153  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| | || || |||||||  ||| || | ||||||| |||    
T  16422970 aatttgagtaaataatgaataactaattggtcctgaagtaccatattttagttcaattgagacacaaaaacgtaccttgttaactactcatgttatgata 16423069  T
Q  154 tatca--------tttgttattttagagatgcaggttatttgtgtga 192  Q
    ||| |        |||||||| ||||| |||||||||||||||||||    
T  16423070 tattatttattactttgttatattagaaatgcaggttatttgtgtga 16423116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 17842284 - 17842465
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcata 153  Q
    ||||| |||||||| ||||||| |||||| |  || |||||||||||||| ||||||||||  | |||||| || |||  |||||||| ||||||| |||    
T  17842284 aatttaagtaaatattgaagaactaattgattctgtagtaccatattttaattcaattgagggataataatttatcttgctaattattcatgttattata 17842383  T
Q  154 ta-------tcatttgttattttagagatgcaggttatttgtgtgaacctcaacattaat-gtgtttgattgaggtcaatga 227  Q
    ||       | ||||||||||||| ||||| ||||||||||| ||| ||||||||||||| | |||||||||||||| ||||    
T  17842384 taatatatattatttgttattttaaagatgtaggttatttgtctgatcctcaacattaatggggtttgattgaggtctatga 17842465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 26539492 - 26539435
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaatt 111  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||    
T  26539492 aatttgagtaaattatgaagaattaattggtcctgaagtaccataatttagttcaatt 26539435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 16244000 - 16243940
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgag 114  Q
    |||| |||||||||||||| || |||||||| ||||| |||||||||||||||||||||||    
T  16244000 aattggagtaaataatgaataactaattggttttgaaataccatattttagttcaattgag 16243940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 16243697 - 16243665
Alignment:
Q  204 aatgtgtttgattgaggtcaatgattgaacaca 236  Q
    |||||||||| ||||||||||||||||||||||    
T  16243697 aatgtgtttggttgaggtcaatgattgaacaca 16243665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 16423157 - 16423189
Alignment:
Q  204 aatgtgtttgattgaggtcaatgattgaacaca 236  Q
    |||||||||| ||||||||||||||||||||||    
T  16423157 aatgtgtttggttgaggtcaatgattgaacaca 16423189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 10936628 - 10936744
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcata 153  Q
    |||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||| | | |||||| |||||| |||| |||| ||||||| |||    
T  10936628 aatttgagtaaataatgaagaactaattgattctgaagtaccatattttagttcaattgaaacataataatataccttgataactattcatgttatgata 10936727  T
Q  154 tatcatttgttatttta 170  Q
    ||| |||||||| ||||    
T  10936728 tattatttgttacttta 10936744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 18773374 - 18773276
Alignment:
Q  71 aagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcatatatcatttgttatttt 169  Q
    ||||| |||||| || |||||||||   ||||||||||||| || |||||||| ||||||| |||||||||||||||||| |||||||| |||||||||    
T  18773374 aagaactaattgctcatgaagtaccgagttttagttcaattaaggaagaataacgtaccttgataattatttatgttatcgtatatcatctgttatttt 18773276  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 11320200 - 11320295
Alignment:
Q  54 aatttgagtaaataatgaagaattaattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttat 149  Q
    ||||||||||||||||||||||  ||||| || |||| ||| |||||||||||||||||||| | |||||||||||||  |||||| | |||||||    
T  11320200 aatttgagtaaataatgaagaacaaattgctcctgaaatacaatattttagttcaattgagagacaataatgtaccttactaattactcatgttat 11320295  T

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Target: scaffold1457 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1457
Description:

Target: scaffold1457; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 1780 - 1671
Alignment:
Q  78 aattggtcttgaagtaccatattttagttcaattgagaaagaataatgtaccttcataattatttatgttatcatatatcatttgttattttagagatgc 177  Q
    |||||||| | ||||||||||||||||||||||||||    ||||||| ||||| |||||||||  | ||||||||||| |||  |||||||||| ||||    
T  1780 aattggtcctaaagtaccatattttagttcaattgaggggcaataatgcacctttataattattcgtattatcatatat-attatttattttagatatgc 1682  T
Q  178 aggttatttgt 188  Q
    | |||||||||    
T  1681 atgttatttgt 1671  T

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