View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_57 (Length: 300)
Name: NF18936_low_57
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 50969936 - 50970200
Alignment:
| Q |
12 |
gagatacaaaatagaatacagaaactaacagttatgaccagggtttggtagctcaattggttcaatctcagagttaaggatgttgaaagagtagataaag |
111 |
Q |
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| T |
50969936 |
gagatacaaaatagaatacagaaactaacagttatgaccagggtttggtagctcaattggttcaatctcagagttaaggatgttgaaagagtagataaag |
50970035 |
T |
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| Q |
112 |
aagaagatattaatctaacaactaagataatagaacttagtattcctactgttttcaactaaaaaagatagtaacattgtcaccaacaattttgaaagaa |
211 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50970036 |
aagaagatattaatctaacaactaa-----tagaacttagtattcctactgttttcaactaaaaaagatagtaacattgtcaccaacaattttgaaagaa |
50970130 |
T |
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| Q |
212 |
aacaaaatgcatctaagtttagttctagcatctaatatactaacatttcactctgaaaccagttagtgct |
281 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50970131 |
aacaaaatgcatctaagtttagttttagcatctaatatactaacatttcactctgaaaccagttagtgct |
50970200 |
T |
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