View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_6 (Length: 606)
Name: NF18936_low_6
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 6 - 589
Target Start/End: Original strand, 4881450 - 4882033
Alignment:
| Q |
6 |
tattagaaaaatagttgtgttgatgaaatccatgtaataaatattttaaaaaccaaaccacggcaacgacaagatatcttcatcgtgattcaactgcttt |
105 |
Q |
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| T |
4881450 |
tattagaaaaaaagttgtgttgatgaaatccatgtaaaaaatattttaaaaatcaaaccacggcaacggcaagatatcttcatcgtgattcaactgcttt |
4881549 |
T |
|
| Q |
106 |
aaaccgtttaaaaagggtcgaaattgcaactaaaccaccaaaataactgaaccatagtaaagactggttcgaggttcaatcggttgaatcacctggatag |
205 |
Q |
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| T |
4881550 |
aaaccgtttaaaaagggtcgaaattgcaattaaaccaccaaaataactgaaccatagtaaagactggttcgaggttcaatcggttgaatcacctagctag |
4881649 |
T |
|
| Q |
206 |
gttggnnnnnnnaacatttggcgtaattgtactgcaatacaaaaattgttggacgggaaacgtgtaaacaattgttttcatctctaattgtgttaagtgg |
305 |
Q |
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| T |
4881650 |
gttggtttttttaacatttggtgtaattgtactgcaatacaaaaaatgttggacgggaaacgtgtaaacaattgttttcatctctaattgtgttaagtgg |
4881749 |
T |
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| Q |
306 |
catctctattgtctttgaatgtgtaaaaattataaaagtatatgtgttcatcttttgttggtaatttcaattttaatggatcaaattgactaatgaaaga |
405 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4881750 |
catctctattgtctttgaatgtgtcaaaattacaaaagtatatgtgttcatcttttgttggtaatttcaatttcaatggatcaaattgactaatgaaaga |
4881849 |
T |
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| Q |
406 |
catatttgatcaccaatttaaccattgaaagacacatccaaagaccaaactaactnnnnnnntaaagtacattcatgtatgcttttgtaattttgaaaga |
505 |
Q |
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||||||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | |
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| T |
4881850 |
catatttgatcacgaatttaaccattcaaagacacattcaaagaccaaactaactaaaaaaataaaatacattcatgtatgcttttgtaattttgaaaca |
4881949 |
T |
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| Q |
506 |
aagactatagtatcgctttttcacaaattcaatgaataaagtgacaaattactcacgcttttccatcaaatggctatttctcac |
589 |
Q |
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| T |
4881950 |
aagactatagtatcgctttctcacaaattcaatgaataaagtgacaaattactcacacttttccatcaaatgtctatttctcac |
4882033 |
T |
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