View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_62 (Length: 283)
Name: NF18936_low_62
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 2932309 - 2932057
Alignment:
| Q |
14 |
tactacaacatcgtttgagttgcacgctcactttcttcagtttggtcactatgctagtctacctcattcatctcattcnnnnnnnaggctgatttggctt |
113 |
Q |
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| T |
2932309 |
tactacaacatcgtttgagttgcacgctcactttcttcagtttggtcactatgctagtctacctcattcatctcattctttttttaggctgatttggctt |
2932210 |
T |
|
| Q |
114 |
gcgtctgtttggactatttagaaggaaaggaataaccagattttcaataatacggcatcgaagttacatatgattttagataaagttaaattgttgtctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
2932209 |
gcgtctgtttggactatttagaaggaaaggaataaccagattttcaataatatgacatcgaagttacatatgattttagacaaggttaaattgttgtctt |
2932110 |
T |
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| Q |
214 |
ttgtgtggttaaaggcaaaaaagttcacttctgcttttgatataatccatttt |
266 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2932109 |
ttgtgtggttaaaggcaaaaaaattcacttctgcttttgatataatccatttt |
2932057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 253
Target Start/End: Original strand, 11831306 - 11831459
Alignment:
| Q |
100 |
ggctgatttggcttgcgtctgtttggactatttagaaggaaaggaataaccagattttcaataatacggcatcgaagttacatatgattttagataaagt |
199 |
Q |
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|||||||||||||||| ||||||||||| |||| |||||||| |||||||| | | ||||| || ||| ||||||| |||||| || ||||||| ||||| |
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| T |
11831306 |
ggctgatttggcttgcttctgtttggaccatttggaaggaaaagaataaccgggtcttcaaaaacacgacatcgaatttacatttgcttttagagaaagt |
11831405 |
T |
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| Q |
200 |
taaattgttgtcttttgtgtggttaaaggcaaaaaagttcacttctgcttttga |
253 |
Q |
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| T |
11831406 |
taagttgttgtcttttgtgtggttaaaggcaaaattgtttacttttgcttttga |
11831459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 32861461 - 32861585
Alignment:
| Q |
99 |
aggctgatttggcttgcgtctgtttggactatttagaaggaaaggaataaccagattttcaataatacggcatcgaagttacatatgattttagataaag |
198 |
Q |
| |
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||||||||||||||||| |||||||||||||||| ||| ||||||||||||| | ||||||| || ||| |||| |||||| || ||||| | || | |
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| T |
32861461 |
aggctgatttggcttgcatctgtttggactattttgaaagaaaggaataaccgggttttcaaaaacacgacatcaggtttacatgtgcttttaaacaagg |
32861560 |
T |
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| Q |
199 |
ttaaattgttgtcttttgtgtggtt |
223 |
Q |
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|||| |||||||||||||||||||| |
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| T |
32861561 |
ttaagttgttgtcttttgtgtggtt |
32861585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 39361916 - 39361791
Alignment:
| Q |
45 |
tttcttcagtttggtcactatgctagtctacctcattcatctcattcnnnnnnnaggctgattt-ggcttgcgtctgtttggactatttagaaggaaagg |
143 |
Q |
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||||||||||||||||||| ||| | ||||||||||||||| || ||||| |||| ||||||| |||||||||||||||| ||||||| | |
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| T |
39361916 |
tttcttcagtttggtcacttggctgatttacctcattcatctcgctcattcttgaggcttattttggcttgcttctgtttggactatttgaaaggaaacg |
39361817 |
T |
|
| Q |
144 |
aataaccagattttcaataatacggc |
169 |
Q |
| |
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|| ||||| ||||| || |||||||| |
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| T |
39361816 |
aacaaccaaatttttaaaaatacggc |
39361791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 3903434 - 3903230
Alignment:
| Q |
24 |
tcgtttgagttgcacgctcactttcttcagtttggtcactatgctagtctacctcattcatctcattcnnnnnnn-aggctgatttggcttgcgtctgtt |
122 |
Q |
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||||||||||||| || |||||||||||| ||||||||||| | | ||||||||| |||||||||||| ||||||||||| ||||| | | || |
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| T |
3903434 |
tcgtttgagttgcgcgatcactttcttcaatttggtcactacgttggtctacctcgttcatctcattcatttttttaggctgatttgacttgcttttatt |
3903335 |
T |
|
| Q |
123 |
tggactatttagaaggaaaggaataaccagattttcaataatacggcatcgaagttacatatgattttagataaagttaaattgttgtcttttgtgtggt |
222 |
Q |
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|||||||||| |||| ||| |||||| | || || || |||||| || | |||||||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
3903334 |
tggactatttggaagcaaaagaataatcgaatctttaaaaatacgacaacaaagttacatatgattttagacaaagtaaagttgttgtcttttgtgtggt |
3903235 |
T |
|
| Q |
223 |
taaag |
227 |
Q |
| |
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||||| |
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| T |
3903234 |
taaag |
3903230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 7573025 - 7572897
Alignment:
| Q |
100 |
ggctgatttggcttgcgtctgtttggactatttagaaggaaaggaataaccagattttcaataatacggcatcgaagttacatatgattttagataaagt |
199 |
Q |
| |
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|||||||||||||||| |||||| | |||| || |||| |||| ||||| || |||||||| || | ||||||| ||| | || |||||||| || || |
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| T |
7573025 |
ggctgatttggcttgcttctgttcgaactacttggaagaaaagaaataatcaaattttcaaaaactcaccatcgaatttatacattattttagacaaggt |
7572926 |
T |
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| Q |
200 |
taaattgttgtcttttgtgtggttaaagg |
228 |
Q |
| |
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||| ||||||| ||| ||||||||||||| |
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| T |
7572925 |
taagttgttgtttttcgtgtggttaaagg |
7572897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 24662500 - 24662545
Alignment:
| Q |
105 |
atttggcttgcgtctgtttggactatttagaaggaaaggaataacc |
150 |
Q |
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|||||| |||| ||| |||||||||||||||||||||| ||||||| |
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| T |
24662500 |
atttggtttgcttctatttggactatttagaaggaaagaaataacc |
24662545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 7566958 - 7567088
Alignment:
| Q |
102 |
ctgatttggcttgcgtctgtttggactatttagaaggaaaggaataaccagattttcaataatacggcatcgaagttacatatgattttagataaagtta |
201 |
Q |
| |
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|||||||||||||| ||||||||| || ||||||||||||| ||||||| ||| || || ||| ||||||| | |||| |||||||| || |||| |
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| T |
7566958 |
ctgatttggcttgcttctgtttggtctctttagaaggaaagaaataaccggatcttaaaaaatgcggcatcagatttactctctattttagacaaggtta |
7567057 |
T |
|
| Q |
202 |
aattgttgtcttttgtgtggttaaaggcaaa |
232 |
Q |
| |
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| ||| | ||||||||||||||||||||||| |
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| T |
7567058 |
agttgctatcttttgtgtggttaaaggcaaa |
7567088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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