View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_68 (Length: 261)
Name: NF18936_low_68
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_68 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 2023000 - 2022752
Alignment:
| Q |
13 |
aatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaa |
112 |
Q |
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| T |
2023000 |
aatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttattcccaaagtcaattctggttctggacaggaaggatagtaatggcaa |
2022901 |
T |
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| Q |
113 |
acaagtgcaagtccttcattgcatctcatttcattcaaatagtttggatcaagtccaagtgcttctgataataactcaaacaatagatttcccagtttca |
212 |
Q |
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| T |
2022900 |
acaagtgcaagtccttcattgcatctcatttcattcaaatagtttggatcaagtccaagtgcttctgataataactcaaacaatagatttcccagtttca |
2022801 |
T |
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| Q |
213 |
taacttgttttgtgtattccaacattatatctctgcaagcatgtgcaca |
261 |
Q |
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| T |
2022800 |
taacttgttttgtgtattccaacattatatctctgcaagcatgtgcaca |
2022752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 10768600 - 10768505
Alignment:
| Q |
13 |
aatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatg |
108 |
Q |
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| T |
10768600 |
aatatggtcttggagaagcacagtgaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatg |
10768505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 2037657 - 2037599
Alignment:
| Q |
55 |
atgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaaa |
113 |
Q |
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| T |
2037657 |
atgcttggctgttcccacagtcaattctggttccggacaagaaggataataatggcaaa |
2037599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 2034128 - 2034035
Alignment:
| Q |
20 |
tcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaaa |
113 |
Q |
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| T |
2034128 |
tcttgtagaagcactgtgaggaaatcattatcagaatgctttgttgttcctacagtcaattctggttcaggacaaggagggtagtaatggcaaa |
2034035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 1948621 - 1948681
Alignment:
| Q |
55 |
atgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaaaca |
115 |
Q |
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| T |
1948621 |
atgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaaca |
1948681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 2050867 - 2050767
Alignment:
| Q |
13 |
aatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaa |
112 |
Q |
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| T |
2050867 |
aatatggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggaggataataatggcaa |
2050768 |
T |
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| Q |
113 |
a |
113 |
Q |
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| T |
2050767 |
a |
2050767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 2055276 - 2055176
Alignment:
| Q |
13 |
aatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaa |
112 |
Q |
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|||||| ||||| |||||||| |||| || || ||||| | |||||| |||||||| | ||||||||||||||| ||||| | ||| |||||||||||| |
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| T |
2055276 |
aatatggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaa |
2055177 |
T |
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| Q |
113 |
a |
113 |
Q |
| |
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| T |
2055176 |
a |
2055176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 2058100 - 2058000
Alignment:
| Q |
13 |
aatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaa |
112 |
Q |
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|||||| ||||||||||||| || | || || ||||| | ||||||||||||||||| ||||||||||||||| ||| | |||||||| ||||| ||| |
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| T |
2058100 |
aatatggtcttgtagaagcattgtcaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcgggataagaaggataataatgacaa |
2058001 |
T |
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| Q |
113 |
a |
113 |
Q |
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| T |
2058000 |
a |
2058000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 2046907 - 2046852
Alignment:
| Q |
58 |
cttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaaa |
113 |
Q |
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|||||||||||||| ||||||||||||||| ||||| | |||||| |||||||||| |
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| T |
2046907 |
cttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
2046852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 2029534 - 2029476
Alignment:
| Q |
55 |
atgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaaa |
113 |
Q |
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|||||| |||||||||| ||||||||||||||| ||||| | |||||| |||||||||| |
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| T |
2029534 |
atgctttgttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
2029476 |
T |
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