View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_low_69 (Length: 259)
Name: NF18936_low_69
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_69 |
 | |
|
| [»] scaffold0425 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 6939308 - 6939397
Alignment:
| Q |
102 |
tgaaaactggagtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcat |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6939308 |
tgaaaactggagtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcat |
6939397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 6526909 - 6526797
Alignment:
| Q |
113 |
gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcattttctgagccgacacaaaaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| || || || |||||||||||| ||||| ||| ||| | ||||||| ||| |
|
|
| T |
6526909 |
gtaaaaggccacatgacatcctcaccatgtaattggttgatgcaattaattcatcggcttcttttctcaagtctcatgtttcctgggaagacacaagaag |
6526810 |
T |
|
| Q |
213 |
aaaagcagacaat |
225 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
6526809 |
aaaaacagacaat |
6526797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 6848489 - 6848377
Alignment:
| Q |
113 |
gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcattttctgagccgacacaaaaag |
212 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| ||||||||||| || || || |||||||||||| |||||| ||| ||| | ||||||| ||| |
|
|
| T |
6848489 |
gtaaaaggccacatggcatcctcaccatgtaattggttgatgcaattaattcatcggcttcttttctcaagtctcgtgtttcctgggaagacacaagaag |
6848390 |
T |
|
| Q |
213 |
aaaagcagacaat |
225 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
6848389 |
aaaaacagacaat |
6848377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6939045 - 6939083
Alignment:
| Q |
1 |
gtgttacattgattgattataacaggccagtcttattga |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6939045 |
gtgttacattgattgattataacaggccagtcttattga |
6939083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 6526980 - 6526944
Alignment:
| Q |
39 |
acaacaaagtggcatgtcattcaattttttatcactt |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6526980 |
acaacaaagtggcatgtcattcaattttttatcactt |
6526944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 6558226 - 6558187
Alignment:
| Q |
36 |
ttgacaacaaagtggcatgtcattcaattttttatcactt |
75 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6558226 |
ttgacaacaaggtggcatgtcattcaattttttatcactt |
6558187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 6789040 - 6789001
Alignment:
| Q |
39 |
acaacaaagtggcatgtcattcaattttttatcacttctt |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6789040 |
acaacaaagtggcatgtcattcaattttttatgacttctt |
6789001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 6558152 - 6558078
Alignment:
| Q |
113 |
gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctc |
187 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||| | || || || ||| |||||||| ||||| |
|
|
| T |
6558152 |
gtaaaaggccacatgacatcctcaccatgtaatttgttgatgcaagtaattcatcggctttttttctcaagtctc |
6558078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 6848561 - 6848532
Alignment:
| Q |
39 |
acaacaaagtggcatgtcattcaatttttt |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6848561 |
acaacaaagtggcatgtcattcaatttttt |
6848532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 11616 - 11504
Alignment:
| Q |
113 |
gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcattttctgagccgacacaaaaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| || || || |||||||||||| ||||| ||| ||| | ||||||| ||| |
|
|
| T |
11616 |
gtaaaaggccacatgacatcctcaccatgtaattggttgatgcaattaattcatcggcttcttttctcaagtctcatgtttcctgggaagacacaagaag |
11517 |
T |
|
| Q |
213 |
aaaagcagacaat |
225 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
11516 |
aaaaacagacaat |
11504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 11687 - 11651
Alignment:
| Q |
39 |
acaacaaagtggcatgtcattcaattttttatcactt |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11687 |
acaacaaagtggcatgtcattcaattttttatcactt |
11651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University