View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_74 (Length: 253)
Name: NF18936_low_74
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36634980 - 36635216
Alignment:
| Q |
1 |
tgtatcattatttgtttgcagggtttgaacaaccttttatggcttgctgtggatatggaggtccgccatttaactatgacagtcgcgtttcttgtggact |
100 |
Q |
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| T |
36634980 |
tgtatcattatttgtttgcagggtttgaacaaccttttatggcttgctgtggatatggaggtccgccatttaactatgacagtcgcgtttcttgtggact |
36635079 |
T |
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| Q |
101 |
aacaacaacgatcttgaatgggaccacaattacagcaaaaggttgcaatgatagcggtgtgtatgtaagctgggacgggactcattacactgaggcttca |
200 |
Q |
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| T |
36635080 |
aacaacaacgatcttgaatgggaccacaattacagcaaaaggttgcaatgatagcggtgtgtatgtaagctgggacgggactcattacactgaggcttca |
36635179 |
T |
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| Q |
201 |
aatcaatatgttgcatcacaaattctcaccagaaact |
237 |
Q |
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| T |
36635180 |
aatcaatatgttgcatcacaaattctcaccagaaact |
36635216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 36639678 - 36639899
Alignment:
| Q |
9 |
tatttgtttgcagggtttgaa-----caaccttttatggcttgctgtggatatggaggtccgccatttaactatgacagtcgcgtttcttgtggactaac |
103 |
Q |
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| T |
36639678 |
tatttgtttgcagggtttgaattgaacagccgattatggcttgttgtggatatggaggcccgccattgaactatgacagtcgcgttttttgtgg---aga |
36639774 |
T |
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| Q |
104 |
aacaacgatcttgaatgggaccacaattacagcaaaaggttgcaatgatagcggtgtgtatgtaagctgggacgggactcattacactgaggcttcaaat |
203 |
Q |
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| T |
36639775 |
aacaaaggtcttaaatggcaccatagttacagccaaaggttgcaataatagtagtgtgtatg-aagctgggacggagctcattttaccgaggccaaaaat |
36639873 |
T |
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| Q |
204 |
caatatgttgcatcacaaattctcac |
229 |
Q |
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| T |
36639874 |
cgatatgttgcatcacaaattctcac |
36639899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 46936902 - 46936691
Alignment:
| Q |
15 |
tttgcagggtttgaacaaccttttatggcttgctgtggatatggaggtccgccatttaactatgacagtcgcgtttcttgtggactaacaacaacgatct |
114 |
Q |
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| T |
46936902 |
tttgcagggtttgaacaacctattatggcatgttgtggatatggaggtccaccattgaactatgacagtagagtcacttgtggg--aaca-caaagacct |
46936806 |
T |
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| Q |
115 |
tgaatgggaccacaattacagcaaaaggttgcaatgatagcggtgtgtatgtaagctgggacgggactcattacactgaggcttcaaatcaatatgttgc |
214 |
Q |
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| T |
46936805 |
tcaatggaaccacaattacagcaaaaggttgtaatgatagttctgagtatatcaactgggacggaattcattacactgagactgcaaatcaatatgttgc |
46936706 |
T |
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| Q |
215 |
atcacaaattctcac |
229 |
Q |
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|||||| |||||||| |
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| T |
46936705 |
atcacagattctcac |
46936691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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