View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_low_76 (Length: 252)
Name: NF18936_low_76
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_76 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 82 - 252
Target Start/End: Original strand, 11574932 - 11575102
Alignment:
| Q |
82 |
atgatattttctaaaggttatcctatctatgagagtgaacttagagagttcattaccaggtaccaattttatgattttatttattcatttacgtccatag |
181 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11574932 |
atgacattttctaaaggttatcctatctatgagagtgaacttagagagttcattaccaggtactaattttatgattttatttattcatttacgtccatag |
11575031 |
T |
|
| Q |
182 |
tcatgtacattatttcttatatcaaatttgtttccctcacttggttttgaatttgcatactactattgtta |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11575032 |
tcatgtacattatttcttatatcaaatttttttccctcacttggttttgaatttgcatactactattgtta |
11575102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 11574773 - 11574848
Alignment:
| Q |
15 |
aatattggaatggtgccacaacaaattcaaccagatgttagggaaatattggccaatttaaatttggatgatattt |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11574773 |
aatattggaatggtgccacaacaaattcaaccagatgttagggaaatattggccaatttaaatttggatgatattt |
11574848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 10363691 - 10363569
Alignment:
| Q |
117 |
tgaacttagagagttcattaccaggtaccaattttatgattttatttattcatttacgtccatagtcatgtacattatttcttatatcaaatttgtttcc |
216 |
Q |
| |
|
||||||| ||| ||| |||||||||||| |||||||| |||||||||| ||||||||||| ||||||||| |||||||||| ||||||| |||||| | |
|
|
| T |
10363691 |
tgaacttggagtgttttttaccaggtaccg-ttttatgagtttatttatttatttacgtccacagtcatgtatattatttcttctatcaaaattgttttc |
10363593 |
T |
|
| Q |
217 |
ctcacttggttttgaatttgcata |
240 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
10363592 |
ctcacttggttttgaatttacata |
10363569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University