View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_78 (Length: 251)
Name: NF18936_low_78
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_78 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 36634450 - 36634696
Alignment:
| Q |
5 |
atgtcgaagaaaataacaatgaatttgttacgttttttattgaaaacattcttgacttgaactccacagtagaaaaattgttttgctgaaattaacattc |
104 |
Q |
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| T |
36634450 |
atgtctaacaaaataacaatgaatttgttacgttttttattgaaaacattcttgacttgaactccacagtagaaaaattgttttgctgaaattaacattc |
36634549 |
T |
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| Q |
105 |
actctcttatttgtgatagagactatatgaccacggggctaggaatttttgggtacataacacaggtccacttggatgcttgggtcaaaatgttgccaca |
204 |
Q |
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| T |
36634550 |
actctcttatttgtgatagagactatatgaccacggggctaggaatttttgggtacataacacaggtccacttggatgcttgggtcaaaatgttgccaca |
36634649 |
T |
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| Q |
205 |
tttggccatgataaatcaaagattgatgaactaggatgtcttggtgc |
251 |
Q |
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| T |
36634650 |
tttggccatgataaatcaaagattgatgaactaggatgtcttggtgc |
36634696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 36639287 - 36639400
Alignment:
| Q |
77 |
aaaaattgttttgctgaaattaacattc-actctcttatttgtg--atagagactatatgaccacggggctaggaatttttgggtacataacacaggtcc |
173 |
Q |
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| T |
36639287 |
aaaaatagttatgcagaaattgacattccactctcttatttgtgtgacagagactgtatgacatcggggtcaggaattttcggatacataacgcgagtcc |
36639386 |
T |
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| Q |
174 |
acttggatgcttgg |
187 |
Q |
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| T |
36639387 |
acttggatgcttgg |
36639400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 46937462 - 46937337
Alignment:
| Q |
118 |
tgatagagactatatgaccacggggctaggaatttttgggtacataacacaggtccacttggatgcttgggtcaaaatgttgccacatttggccatgata |
217 |
Q |
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| T |
46937462 |
tgatagagactatatgatgagggggctagatatttctggatacacaatacaggtcctcttggatgcttagctcagaatgttgccaaatttggaactgatc |
46937363 |
T |
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| Q |
218 |
aatcaaagattgatgaactaggatgt |
243 |
Q |
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| T |
46937362 |
catcaaagcttgatgaactaggatgt |
46937337 |
T |
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