View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_80 (Length: 250)
Name: NF18936_low_80
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36728764 - 36728528
Alignment:
| Q |
1 |
tcgcgagagcttgtgcaaaggtgagagtggctgtgcgattaccagtacgcggagcggatggcggcagagaggccaataaagaccatggcacaatgatagc |
100 |
Q |
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| T |
36728764 |
tcgcgagagcttgtgcaaaggtgagagtggctgtgcggttaccagtacgtgcagcggatggcggcagagaggccaataaagaccatggaacaatgatagc |
36728665 |
T |
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| Q |
101 |
catggttacttgcgctccaagaaaagaaataaaccatggtttcagaattcaaaggattatacatctgccaccattaatgaatcttaaacgtatatatgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36728664 |
catggttacttgcgctccaagaaaagaaataaaccatggtttcagaattcaaaggattatacatctgccaccattaatgaatctttaacgtatatatgag |
36728565 |
T |
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| Q |
201 |
aaaaactaaagatataatcgtatctcatcacacaggt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
36728564 |
aaaaactaaagatataatcgtatctcatcacacaggt |
36728528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 36715145 - 36714914
Alignment:
| Q |
1 |
tcgcgagagcttgtgcaaaggtgagagtggctgtgcgattaccagtacgcggagcggatggcggcagagaggccaataaagaccatggcacaatgatagc |
100 |
Q |
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|||| ||||||||||||||||| |||| | |||||| || ||| || || |||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
36715145 |
tcgcaagagcttgtgcaaaggtctgagtagttgtgcggttgccaataggcatagcggatggcggcagagaggccaaaaaagaccatggcacaatgttagc |
36715046 |
T |
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| Q |
101 |
catggttacttgcgctccaagaaaagaaat-aaaccatggtttcagaattcaaaggattatacatctgccaccattaatgaatcttaaacgtatatatga |
199 |
Q |
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||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||| || ||| ||| || |||| |||||||||||||||||| |
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| T |
36715045 |
catggttacttgcgctccaagaaaatcaataaaaccatgatttcagaattcaaaggataatatatatgctaccgtttatgagtcttaaacgtatatatga |
36714946 |
T |
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| Q |
200 |
gaaaaactaaagatataatcgtatctcatcac |
231 |
Q |
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| T |
36714945 |
ggaaaactaaagatataatcttatctcatcac |
36714914 |
T |
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