View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_81 (Length: 250)
Name: NF18936_low_81
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_81 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 38041651 - 38041409
Alignment:
| Q |
10 |
aagaatatttaacgatggtataatttttacacaacattctttaat--tatatccatcaactcattgattttcagccaataataaatctaagtggttgaaa |
107 |
Q |
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| T |
38041651 |
aagaatatttaacgatggtataatttttacacaacattctttaatattatatccatcaactcattgattttcagccaataacaaatctaagtggttgaaa |
38041552 |
T |
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| Q |
108 |
tctttttgtgatcaattcttgatataatctctttagataattagcaatgcttgttttgtttactctctttatcgattatttccatatccttggattttta |
207 |
Q |
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| T |
38041551 |
tcttttcgcgatcaattcttgatataatctctttagataattagcaatgcttgttttgtttactctctttatcgattatttccatatccttggattttta |
38041452 |
T |
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| Q |
208 |
ttttctttctaaatatcgcattaatcctccacatacacattta |
250 |
Q |
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| T |
38041451 |
ttttctttctaaatatcgcattaatcctccacatacacattta |
38041409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 2767572 - 2767504
Alignment:
| Q |
90 |
aaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatgct |
158 |
Q |
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| T |
2767572 |
aaatttaattggttgaaatcattctgtgatccattcttgatataatctctctatataaatagcaatgct |
2767504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 24250542 - 24250593
Alignment:
| Q |
107 |
atctttttgtgatcaattcttgatataatctctttagataattagcaatgct |
158 |
Q |
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| T |
24250542 |
atcttttcttgatcaattcttgataaaatctctttagatagatagcaatgct |
24250593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 43579012 - 43579087
Alignment:
| Q |
81 |
gccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatg |
156 |
Q |
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| T |
43579012 |
gccaataagaaaattaattggctggaatcttttcgtgatcaattcttgatataatatcgctagataaatagcaatg |
43579087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 43591050 - 43590976
Alignment:
| Q |
81 |
gccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaat |
155 |
Q |
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| T |
43591050 |
gccaataagaaaactaattggctggaatcttttcgtgatcaattcttaatataatctcgcaagataaatagcaat |
43590976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 18645 - 18603
Alignment:
| Q |
116 |
tgatcaattcttgatataatctctttagataattagcaatgct |
158 |
Q |
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| T |
18645 |
tgatcaattcttaataaaatctctttagataaatagcaatgct |
18603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 24068214 - 24068260
Alignment:
| Q |
117 |
gatcaattcttgatataatctctttagataattagcaatgcttgttt |
163 |
Q |
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| T |
24068214 |
gatcaattcttgataaaatctctctagataaatagcaatgctcgttt |
24068260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 48897730 - 48897819
Alignment:
| Q |
69 |
cattgattttcagccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatgct |
158 |
Q |
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| T |
48897730 |
cattgattttcgacaaataacaaatttaacttgctgaaacatttttttgattaattcttgataaaatctctctagataaatagcaatgct |
48897819 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 28867194 - 28867154
Alignment:
| Q |
118 |
atcaattcttgatataatctctttagataattagcaatgct |
158 |
Q |
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| T |
28867194 |
atcaattcttgataaaatctctttagataaataacaatgct |
28867154 |
T |
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