View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_low_90 (Length: 242)

Name: NF18936_low_90
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_low_90
NF18936_low_90
[»] chr7 (5 HSPs)
chr7 (17-100)||(42901305-42901388)
chr7 (171-235)||(42901451-42901515)
chr7 (171-208)||(43352795-43352832)
chr7 (99-131)||(6980957-6980989)
chr7 (99-131)||(48583311-48583343)
[»] chr1 (4 HSPs)
chr1 (79-130)||(44382435-44382486)
chr1 (88-131)||(33734215-33734259)
chr1 (81-127)||(39128196-39128242)
chr1 (83-127)||(421138-421182)
[»] chr2 (1 HSPs)
chr2 (93-127)||(5913544-5913578)
[»] scaffold0312 (1 HSPs)
scaffold0312 (83-127)||(9389-9433)
[»] chr3 (1 HSPs)
chr3 (177-205)||(36738287-36738315)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 42901305 - 42901388
Alignment:
Q  17 acttattttgttatttccactattccatgtggtactttgatggatatccatttagacacaacgggtagcatttggatgacattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  42901305 acttattttgttatttccactattccatgtggtactttgatggatatccacttagacacaacggatagcatttggatgacattg 42901388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 42901451 - 42901515
Alignment:
Q  171 atacatttgtgatattgtggttgaccaatatcacctaattattttcgaaacacaacatattcttc 235  Q
    |||||||||||| ||| | ||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  42901451 atacatttgtgacattatagttaaccaatatcacctaattattttcgagacacaacatatccttc 42901515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 43352832 - 43352795
Alignment:
Q  171 atacatttgtgatattgtggttgaccaatatcacctaa 208  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  43352832 atacacttgtgatattgtggttgactaatatcacctaa 43352795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 6980989 - 6980957
Alignment:
Q  99 tgtgacattggccaaccacaatattacaagtgg 131  Q
    |||||||||||||||||||||| ||||||||||    
T  6980989 tgtgacattggccaaccacaatgttacaagtgg 6980957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 48583311 - 48583343
Alignment:
Q  99 tgtgacattggccaaccacaatattacaagtgg 131  Q
    |||||||||||||||||||||||| ||||||||    
T  48583311 tgtgacattggccaaccacaatataacaagtgg 48583343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 44382486 - 44382435
Alignment:
Q  79 gggtagcatttggatgacattgtgacattggccaaccacaatattacaagtg 130  Q
    |||||||| |||| |||||||||||||||||||||||||||||| |||||||    
T  44382486 gggtagcacttgggtgacattgtgacattggccaaccacaatatcacaagtg 44382435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 33734215 - 33734259
Alignment:
Q  88 ttggatgacattg-tgacattggccaaccacaatattacaagtgg 131  Q
    |||| |||||||| |||||||||||||||||||||||||||||||    
T  33734215 ttgggtgacattggtgacattggccaaccacaatattacaagtgg 33734259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 39128196 - 39128242
Alignment:
Q  81 gtagcatttggatgacattgtgacattggccaaccacaatattacaa 127  Q
    ||||||||||| ||||||||||| |||| ||||| ||||||||||||    
T  39128196 gtagcatttgggtgacattgtgatattgaccaacaacaatattacaa 39128242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 421138 - 421182
Alignment:
Q  83 agcatttggatgacattgtgacattggccaaccacaatattacaa 127  Q
    |||| |||| ||||||||||||||||| |||||||||| ||||||    
T  421138 agcacttgggtgacattgtgacattggtcaaccacaatgttacaa 421182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 5913544 - 5913578
Alignment:
Q  93 tgacattgtgacattggccaaccacaatattacaa 127  Q
    |||||||||||||||||||||||||||| ||||||    
T  5913544 tgacattgtgacattggccaaccacaatcttacaa 5913578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 9433 - 9389
Alignment:
Q  83 agcatttggatgacattgtgacattggccaaccacaatattacaa 127  Q
    |||| |||| ||||||||||||||||| |||||||||| ||||||    
T  9433 agcacttgggtgacattgtgacattggtcaaccacaatgttacaa 9389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 36738315 - 36738287
Alignment:
Q  177 ttgtgatattgtggttgaccaatatcacc 205  Q
    |||||||||||||||||||||||||||||    
T  36738315 ttgtgatattgtggttgaccaatatcacc 36738287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University