View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_low_93 (Length: 240)
Name: NF18936_low_93
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_93 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 31845134 - 31845358
Alignment:
| Q |
16 |
cacatcacaggtagaagaagtaaaagagggaagagttaattatgagtattagctcataaatagagttgaggactttctagtcaatagtcagtaaaactat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31845134 |
cacatcacaggtagaagaagtaaaagagggaagagttaattatgagtattagctcataaatagagttgaggactttctagtcaatagtcagtaaaactat |
31845233 |
T |
|
| Q |
116 |
gaactcctcctaggttagctataagtaaccggggtccagggtatggcctcttttctttttcttcatttgagtggttttttcaattaactataagtttaac |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31845234 |
gaactcctcctaggttggctataagtaaccggggtccagggtatggcctcttttctttttcttcatttgagtggttttttcaattaactataagtttaac |
31845333 |
T |
|
| Q |
216 |
caatgtatatttggattagtggtgt |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31845334 |
caatgtatatttggattagtggtgt |
31845358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University