View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_96 (Length: 239)
Name: NF18936_low_96
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_96 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3437736 - 3437519
Alignment:
| Q |
1 |
cagagactaattagatatagtaaattagacacaagttaacagaaaaaccaagttgctcaatgtcatgttttctttttggctattcgcatatttcggggta |
100 |
Q |
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| T |
3437736 |
cagagactaattagatatagtaaattagatacaagttaacagaaaaaccaagttgctcaatgtcatgttttctttttggctattcgcatatttcggggta |
3437637 |
T |
|
| Q |
101 |
aatgagagacgaagtgacaaacaccgtcttaaattcacacgctcagctgggaggtcccttgtgtccagcataacaatattaacatttttgtagtaaacga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437636 |
aatgagagacgaagtgacaaacaccgtcttaaattcacacgctcagctgcgaggtcccttgtgtccagcataacaatattaacatttttgtagtaaacga |
3437537 |
T |
|
| Q |
201 |
acacaaaacaacttatgc |
218 |
Q |
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|||||||||||||||||| |
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| T |
3437536 |
acacaaaacaacttatgc |
3437519 |
T |
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