View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18937_high_17 (Length: 256)
Name: NF18937_high_17
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18937_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44348171 - 44347937
Alignment:
| Q |
1 |
tgggtgaattttgagcaggtaacctttccattttttgtattgcatggagaaacagatacagtgacagacccagaagtaagcagggcattatatgagagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44348171 |
tgggtgaattttgagcaggtaacctttccattttttgtattgcatggagaaacagatacagtgacagacccagaagtaagcagggcattatatgagagag |
44348072 |
T |
|
| Q |
101 |
ctagtagcaaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatgacaacattgaaaaagtttttgaagacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44348071 |
ctagtagcaaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatgacaacattgaaaaagtttttgaagacat |
44347972 |
T |
|
| Q |
201 |
catcacgtggcttgacaagcacgccaacaatgatg |
235 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
44347971 |
catcacatggcttgacaagcacgccaacaatgatg |
44347937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 39562493 - 39562662
Alignment:
| Q |
4 |
gtgaattttgagcaggtaacctttccattttttgtattgcatggagaaacagatacagtgacagacccagaagtaagcagggcattatatgagagagcta |
103 |
Q |
| |
|
||||||||||||||||| || || || || || || || |||||||| ||||| |||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
39562493 |
gtgaattttgagcaggtgacgttgcctttcttagtgttacatggagaggaagataaagtgacagacccggaagtaagcaaggcattatatgagagagcta |
39562592 |
T |
|
| Q |
104 |
gtagcaaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatga |
173 |
Q |
| |
|
|||| ||| ||||| || |||||||||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
39562593 |
gtagtgtagacaagaccataaaattgtaccctggaatgtggcatggcttaacagctggggagcctgatga |
39562662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 52216378 - 52216331
Alignment:
| Q |
106 |
agcaaagataagacaattaaattgtaccctggaatgtggcatggttta |
153 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
52216378 |
agcaaagataagacactgaaattgtaccctggaatgtggcatggttta |
52216331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University