View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18937_high_6 (Length: 463)

Name: NF18937_high_6
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18937_high_6
NF18937_high_6
[»] chr7 (9 HSPs)
chr7 (18-453)||(33410455-33410878)
chr7 (18-453)||(33424357-33424793)
chr7 (297-453)||(33416304-33416460)
chr7 (246-453)||(33428024-33428232)
chr7 (18-180)||(33416563-33416725)
chr7 (336-453)||(33436509-33436626)
chr7 (22-144)||(33436766-33436888)
chr7 (45-147)||(33427829-33427931)
chr7 (186-224)||(33416504-33416542)
[»] scaffold0262 (1 HSPs)
scaffold0262 (365-453)||(5180-5268)
[»] chr1 (4 HSPs)
chr1 (326-453)||(24985049-24985176)
chr1 (326-453)||(24990879-24991006)
chr1 (22-134)||(24984732-24984844)
chr1 (22-134)||(24990562-24990674)


Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 33410878 - 33410455
Alignment:
Q  18 tttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33410878 tttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctcaagacaaagtt 33410779  T
Q  118 tttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggcttcatatttaattgtttaactaattagtgtatctcataatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  33410778 tttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggtttcatattcaattgtttaactaattagtgtatctcataatt 33410679  T
Q  218 ataattagggttataattaacttttgtttagatgaacttgtattaatctaatatgaactaattcagttttatctccttctttttagttttcaactatgac 317  Q
    |||            |||||||||||||||||||||| |||||||||||||||||||||||||  |||| ||||| |||||||||||||||||||||||     
T  33410678 ata------------attaacttttgtttagatgaacatgtattaatctaatatgaactaattttgtttcatctctttctttttagttttcaactatgat 33410591  T
Q  318 ccttcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattc 417  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33410590 ccggcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattc 33410491  T
Q  418 aactaaaaacagaaggaagaaagtggtatgtctgtg 453  Q
    ||||||||||||||||||||||||||||||| ||||    
T  33410490 aactaaaaacagaaggaagaaagtggtatgtttgtg 33410455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 33424793 - 33424357
Alignment:
Q  18 tttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  33424793 tttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcaatgggctcaagacaaagtt 33424694  T
Q  118 tttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggcttcatatttaatt-gtttaactaatta---gtgtatctcat 213  Q
    || ||||||||||||||  |||||||||||  || ||||||||||||| | ||||||| ||||  |||| || |||||  |||| |   |  || ||  |    
T  33424693 ttccgtgttggagacaacttaggtatgtaa--aagggaaaaaacaaattttcatttggtttcaagtttatttagttta--taatcaactgcataactagt 33424598  T
Q  214 aattata-attagggttataattaacttttgtttagatgaacttgtattaatctaatatgaactaattcagttttatctccttctttttagttttcaact 312  Q
     | |  | |||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| |||| ||||||||||||||||||||    
T  33424597 tagtgcatattatgattataattaacttttgtttagatgaacatgtattaatctaatatgaactaattttgtttcatcttcttctttttagttttcaact 33424498  T
Q  313 atgacccttcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatat 412  Q
    |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33424497 atgatccggcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatat 33424398  T
Q  413 cattcaactaaaaacagaaggaagaaagtggtatgtctgtg 453  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  33424397 cattcaactaaaaacagaaggaagaaagtggtatgtttgtg 33424357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 297 - 453
Target Start/End: Complemental strand, 33416460 - 33416304
Alignment:
Q  297 tttttagttttcaactatgacccttcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcacttt 396  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  33416460 tttttagttttcaactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcacttt 33416361  T
Q  397 ctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtctgtg 453  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33416360 ctaccggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtg 33416304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 246 - 453
Target Start/End: Original strand, 33428024 - 33428232
Alignment:
Q  246 tagatgaacttgtattaatctaatatgaactaattcagttttatctccttc-tttttagttttcaactatgacccttcaaggcacaatgttttcaaagta 344  Q
    |||||||||| |||||||||||||| |||||||||  ||||||||| |||  ||||||||||||||||||||||||||||| |||||||||||||||||     
T  33428024 tagatgaactggtattaatctaatacgaactaattacgttttatcttctttatttttagttttcaactatgacccttcaagacacaatgttttcaaagtg 33428123  T
Q  345 aatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggt 444  Q
    || |||||| ||||||| || ||||||||||||||| |||| |||||||||||||| ||||||||||| ||||  ||||| || |||| || ||||||||    
T  33428124 aacggcacattctttcagagatgcacttttccaccacaaaacgaagcactttctaccggaaaggatattattcccctaaagactgaagaaacaaagtggt 33428223  T
Q  445 atgtctgtg 453  Q
    |||| ||||    
T  33428224 atgtttgtg 33428232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 33416725 - 33416563
Alignment:
Q  18 tttactttcatcagttgcaattgc---aactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaa 114  Q
    ||||||||||||||||||||||||   ||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  33416725 tttactttcatcagttgcaattgctgcaactgattatattgttggtgatgacaagggttggaccgttgattttgattacactcaatgggctcaagacaaa 33416626  T
Q  115 gtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggcttca 180  Q
    |||||||||||||||||||| |||||||||   ||||||||||||| |||| ||||||||| ||||    
T  33416625 gtttttcgtgttggagacaacctaggtatg---taaaaggaaaaaataaatgtccatttggtttca 33416563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 336 - 453
Target Start/End: Complemental strand, 33436626 - 33436509
Alignment:
Q  336 ttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaacagaaggaa 435  Q
    |||||||| ||||| ||||| ||| |   |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  33436626 ttcaaagtgaatggtacactttttaaggactgcacttttccaccaaaaaatgaagcactctctacgggaaaggatatcattcaactaaaaacagaaggaa 33436527  T
Q  436 gaaagtggtatgtctgtg 453  Q
    ||||||||||||| ||||    
T  33436526 gaaagtggtatgtttgtg 33436509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 33436888 - 33436766
Alignment:
Q  22 ctttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttc 121  Q
    ||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| | || ||||||||| |||| ||||| ||||| |    
T  33436888 ctttcttcagttgcaatggcagccgatcacattgttggtgatgacaagggttggactgttgattttaactatactcagtggactcaggacaaggttttcc 33436789  T
Q  122 gtgttggagacaatctaggtatg 144  Q
    ||||||| ||||| || ||||||    
T  33436788 gtgttggtgacaaccttggtatg 33436766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 33427829 - 33427931
Alignment:
Q  45 tgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatg 144  Q
    |||||| ||||| ||||||||||| || |||||| || | ||  |||||||||| |||||  |||||||||||||||||||||| |||||||| ||||||    
T  33427829 tgatcatattgtgggtgatgacaatggctggactattaacttcaattacactcaatgggcgtaagacaaagtttttcgtgttggtgacaatcttggtatg 33427928  T
Q  145 taa 147  Q
    |||    
T  33427929 taa 33427931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 33416542 - 33416504
Alignment:
Q  186 aattgtttaactaattagtgtatctcataattataatta 224  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  33416542 aattgcttaactaattagtgtatctcatagttataatta 33416504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 365 - 453
Target Start/End: Original strand, 5180 - 5268
Alignment:
Q  365 ctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtctgtg 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  5180 ctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtg 5268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 326 - 453
Target Start/End: Original strand, 24985049 - 24985176
Alignment:
Q  326 gcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaa 425  Q
    ||||||||| ||||||||  |||| | ||||||||||||||||||||||||| || |||||||||||||||| || ||||||||  | |||||||| |||    
T  24985049 gcacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaa 24985148  T
Q  426 acagaaggaagaaagtggtatgtctgtg 453  Q
    || |||||||||||||||||||| ||||    
T  24985149 accgaaggaagaaagtggtatgtatgtg 24985176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 326 - 453
Target Start/End: Original strand, 24990879 - 24991006
Alignment:
Q  326 gcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaa 425  Q
    ||||||||| ||||||||  |||| | ||||||||||||||||||||||||| || |||||||||||||||| || ||||||||  | |||||||| |||    
T  24990879 gcacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaa 24990978  T
Q  426 acagaaggaagaaagtggtatgtctgtg 453  Q
    || |||||||||||||||||||| ||||    
T  24990979 accgaaggaagaaagtggtatgtatgtg 24991006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 24984732 - 24984844
Alignment:
Q  22 ctttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttc 121  Q
    ||||| ||||| ||||| ||| |||||||| |||| |||||||| ||||||||||| ||||||||  | |||||||| ||||| ||||||||||||||||    
T  24984732 ctttcctcagtagcaatggcagctgatcacgttgtgggtgatgaaaagggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttc 24984831  T
Q  122 gtgttggagacaa 134  Q
    ||||||| |||||    
T  24984832 gtgttggtgacaa 24984844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 24990562 - 24990674
Alignment:
Q  22 ctttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttc 121  Q
    ||||| ||||| ||||| ||| |||||||| |||| |||||||| ||||||||||| ||||||||  | |||||||| ||||| ||||||||||||||||    
T  24990562 ctttcctcagtagcaatggcagctgatcacgttgtgggtgatgaaaagggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttc 24990661  T
Q  122 gtgttggagacaa 134  Q
    ||||||| |||||    
T  24990662 gtgttggtgacaa 24990674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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