View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18937_low_1 (Length: 713)
Name: NF18937_low_1
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18937_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 694; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 1 - 713
Target Start/End: Original strand, 23213812 - 23214525
Alignment:
| Q |
1 |
ctaagaacctatgagtaaaaatcatcatagtacagtaaatgtaatgacgacaaaacatgttccagtctctggacaggaagtgtttcaaggccttccattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213812 |
ctaagaacctatgagtaaaaatcatcatagtacagtaaatgtaatgacgacaaaacatgttccagtctctggacaggaagtgtttcaaggccttccattc |
23213911 |
T |
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| Q |
101 |
tagttttggtattcataaaaccgagaatacaacgtaaaaacactacagttaggtcatggtttgtggtaaagtcaaattcatgcataacatattttgattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213912 |
tagttttggtattcataaaaccgagaatacaacgtaaaagcactacagttaggtcatggtttgtggtaaagtcaaattcatgcataacatattttgattc |
23214011 |
T |
|
| Q |
201 |
cttttcaaaagtacaatacaatcactaattgatattcattacacaaaagacaaatttt-tgcaatagttttgtaaactgaaaacataaagttcattcaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23214012 |
cttttcaaaagtacaatacaatcactaattgatattcattacacaaaagacaaattttttgcaatagttttgtaaagtgaaaacataaagttcattcaca |
23214111 |
T |
|
| Q |
300 |
acacataattaaaagacaatgctactaataggaaagataggcagtgaggtgcaagagagtttcaagtccatcagtgttatgttgctgaccgttgaccgga |
399 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23214112 |
acacataattaaaagacaacgctactaataggaaagataggcagtgaggtgcaagagagtttcaagtccatcagtgttatgttgctgaccgttgaccgga |
23214211 |
T |
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| Q |
400 |
aatgtcttaataatagcaaatccattagcattcacatactttccggttcctccaatgattgcaagttgtgattgtgaaacttgtgttgttctgtggactc |
499 |
Q |
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| T |
23214212 |
aatgtcttaataatagcaaatccattagcattcacatactttccggttcctccaatgattgcaagttgtgattgtgaaacttgtgttgttctgtggactc |
23214311 |
T |
|
| Q |
500 |
caaagaagctgagactatcttcataaccattctcttcaaactttgcagtgaatgccattacttgacttgttccttccgttgaacttgctatataaaatcc |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23214312 |
caaagaagctgagactatcttcataaccattctcttcaaactttgcagtgaatgccattacttgacttgttccttccgttgaacttgctatataaaatcc |
23214411 |
T |
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| Q |
600 |
ttgtgcttttccaactaatcctgatcccaactcttcaccttctgtcagttcatcatcaaacactgtcattgtaccaaacatcagctcctgcaccgtcgtt |
699 |
Q |
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| T |
23214412 |
ttgtgcttttccaactaatcctgatcccaactcttcaccttctgtcagttcatcatcaaacactgtcattgtaccaaacatcagctcctgcaccgtcgtt |
23214511 |
T |
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| Q |
700 |
ccctgcggtatctg |
713 |
Q |
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|||||||||||||| |
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| T |
23214512 |
ccctgcggtatctg |
23214525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 206 - 713
Target Start/End: Complemental strand, 23239104 - 23238596
Alignment:
| Q |
206 |
caaaagtacaatacaatcactaattgatattcattacacaaaagacaaattttt-gcaatagttttgtaaactgaaaacataaagttcattcacaacaca |
304 |
Q |
| |
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|||||||||||| |||||||| || | ||| || ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23239104 |
caaaagtacaatgtaatcactagttaagatttatcacacaaaagacaaattttttgcaatagttttgtaaagtgaaaacataaagttcattcacaacaca |
23239005 |
T |
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| Q |
305 |
taattaaaagacaatgctactaataggaaagataggcagtgaggtgcaagagagtttcaagtccatcagtgttatgttgctgaccgttgaccggaaatgt |
404 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23239004 |
taattaaaagacaacgctactaataggaaagataggcagtgaggtgcaagagagtttcaagtccatcagtgttatgttgctgaccgttgaccggaaatgt |
23238905 |
T |
|
| Q |
405 |
cttaataatagcaaatccattagcattcacatactttccggttcctccaatgattgcaagttgtgattgtgaaacttgtgttgttctgtggactccaaag |
504 |
Q |
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| T |
23238904 |
cttaataatagcaaatccattagcattcacatactttccggttcctccaatgattgcaagttgtgattgtgaaacttgtgttgttctgtggactccaaag |
23238805 |
T |
|
| Q |
505 |
aagctgagactatcttcataaccattctcttcaaactttgcagtgaatgccattacttgacttgttccttccgttgaacttgctatataaaatccttgtg |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23238804 |
aagctgagactatcttcataaccattctcttcaaactttgcagtgaatgccattacttgacttgttccttccgttgaacttgctatataaaatccttgtg |
23238705 |
T |
|
| Q |
605 |
cttttccaactaatcctgatcccaactcttcaccttctgtcagttcatcatcaaacactgtcattgtaccaaacatcagctcctgcaccgtcgttccctg |
704 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23238704 |
cttttccaactaatcctgatcccaactcttcaccttctgtcagttcatcatcaaacactgtcattgtaccaaacatcagctcctgcaccgtcgttccctg |
23238605 |
T |
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| Q |
705 |
cggtatctg |
713 |
Q |
| |
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||||||||| |
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| T |
23238604 |
cggtatctg |
23238596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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