View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18937_low_13 (Length: 308)

Name: NF18937_low_13
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18937_low_13
NF18937_low_13
[»] scaffold0007 (1 HSPs)
scaffold0007 (18-290)||(75070-75342)
[»] chr6 (12 HSPs)
chr6 (76-271)||(29767101-29767296)
chr6 (77-257)||(29471945-29472125)
chr6 (79-289)||(29689107-29689317)
chr6 (78-274)||(29662668-29662863)
chr6 (76-290)||(29718286-29718503)
chr6 (89-290)||(29711668-29711864)
chr6 (79-275)||(29755593-29755789)
chr6 (70-258)||(29671246-29671434)
chr6 (78-290)||(29799807-29800020)
chr6 (78-290)||(28487394-28487608)
chr6 (142-221)||(29741318-29741397)
chr6 (212-257)||(29704908-29704953)
[»] chr3 (1 HSPs)
chr3 (89-290)||(618871-619072)
[»] chr8 (1 HSPs)
chr8 (76-286)||(12592388-12592601)
[»] scaffold0012 (1 HSPs)
scaffold0012 (18-255)||(208618-208858)
[»] chr1 (1 HSPs)
chr1 (81-259)||(5918229-5918407)


Alignment Details
Target: scaffold0007 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 75070 - 75342
Alignment:
Q  18 caatggcaatacatttttctatacatatgatgagaagatacgtatgtcacgactgaaaatgtatcatttaaatctttttcatatgaaaagggaaaaattc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75070 caatggcaatacatttttctatacatatgatgagaagatacgtatgtgacgactgaaaatgtatcatttaaatctttttcatatgaaaagggaaaaattc 75169  T
Q  118 aacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatccatatattgaaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75170 aacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatccatatattgaaag 75269  T
Q  218 agaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcgggatg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75270 agaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcgggatg 75342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 76 - 271
Target Start/End: Complemental strand, 29767296 - 29767101
Alignment:
Q  76 atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact 175  Q
    |||||||||||  |||||||||||||| ||| |||| | ||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  29767296 atgtatcatttgcatctttttcatatgcaaatggaatacttcaatgataatatggacaaggcacttttagaaaataaatggaaccatgcagaggttgact 29767197  T
Q  176 ttggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaaca 271  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||    
T  29767196 ttggattcccattcatgtttagtggaatccatgtattgaaagagaaaagtagcatgaaagatattcgattcaccaacccagagaatgatgctaaca 29767101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 77 - 257
Target Start/End: Original strand, 29471945 - 29472125
Alignment:
Q  77 tgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactt 176  Q
    |||||||| || |||||||||||||| ||| ||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29471945 tgtatcatctacatctttttcatatgcaaatggaaaaattgaataataatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgactt 29472044  T
Q  177 tggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccaga 257  Q
    ||| | ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  29472045 tgggttcccattcatgtatagtggaatccatgtattgaaaaagaaaagtaacatgaaggatattcaattcaccaacccaga 29472125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 79 - 289
Target Start/End: Complemental strand, 29689317 - 29689107
Alignment:
Q  79 tatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttg 178  Q
    ||||||||  |||||||||||||| ||  |||| | ||||| | || |||||| |||||||||||||||||||| ||||||||||||||| |||||||||    
T  29689317 tatcatttgcatctttttcatatgcaagtggaatacttcaatggtaatatggataaagcacttttagaaaataaatggaaccatgcagaggttgactttg 29689218  T
Q  179 gatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgtt 278  Q
    ||| ||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||| ||||||| | ||||||||||||||||    
T  29689217 gattcccattcatgtttagtggaatccatgtattgaaagagaagagtaacatgaaggatattagattcaccaatccagagaatgatgctaacattgtgtt 29689118  T
Q  279 acgctcgggat 289  Q
    || ||||||||    
T  29689117 acactcgggat 29689107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 78 - 274
Target Start/End: Complemental strand, 29662863 - 29662668
Alignment:
Q  78 gtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgacttt 177  Q
    |||||||||| |||||||||||||| |||  ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29662863 gtatcatttacatctttttcatatgcaaactgaaaaattcaatgatgatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgacttt 29662764  T
Q  178 ggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattg 274  Q
    |||| |||||||  | || ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||| ||||    
T  29662763 ggattcccattccagaat-gtggaatccatgtattgaaagagaaaagtaacatgaatgatattcgattcaccaacccagagaatgatgctaatattg 29662668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 76 - 290
Target Start/End: Complemental strand, 29718503 - 29718286
Alignment:
Q  76 atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact 175  Q
    |||||||||||  |||||||||||||| ||| ||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || | |    
T  29718503 atgtatcatttgcatctttttcatatgcaaacggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatgcagagatttatt 29718404  T
Q  176 ttgga---tccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacat 272  Q
    ||||    ||  ||||||||||||||||| ||||| |||||||||| |||| ||||||| |||||||||||||||||||||||| || | ||||||||||    
T  29718403 ttggtgtctctgcattcatgtatagtggagtccatgtattgaaagaaaaaaatagcatggaggatattcgattcaccaacccagcgaatgatgctaacat 29718304  T
Q  273 tgtgttacgctcgggatg 290  Q
    |||||||| |||||||||    
T  29718303 tgtgttacactcgggatg 29718286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 89 - 290
Target Start/End: Complemental strand, 29711864 - 29711668
Alignment:
Q  89 atctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccatt 188  Q
    ||||||||||| || ||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||    
T  29711864 atctttttcatttgcaaatggaaaatttcaatgataatatagacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggattcccttt 29711765  T
Q  189 catgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcggga 288  Q
    |  | |||||||||||||| |||||||||||||||||| |||||| || |||| ||||||||     |||| | |||| ||||||||||||| |||||||    
T  29711764 ccagaatagtggaatccatgtattgaaagagaaaagtaacatgaaagacattcaattcacca-----gagaatgatgccaacattgtgttacactcggga 29711670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 79 - 275
Target Start/End: Complemental strand, 29755789 - 29755593
Alignment:
Q  79 tatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttg 178  Q
    ||||||||  |||||||||||||| ||| |||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||| ||  |||||    
T  29755789 tatcatttgcatctttttcatatgcaaatggaaaacttcaatgataatatggacaaagcactttcagaaaataagtggaaccatgcggaggttctctttg 29755690  T
Q  179 gatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgt 275  Q
    ||| |  |||| |  | |||||||||||| ||||||||||||||| || | |||||||||||||||||||||| ||||||| | |||||||||||||    
T  29755689 gattcaaattccttaaaagtggaatccatgtattgaaagagaaaattaacttgaaggatattcgattcaccaatccagagaatgatgctaacattgt 29755593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 70 - 258
Target Start/End: Complemental strand, 29671434 - 29671246
Alignment:
Q  70 ctgaaaatgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagc 169  Q
    ||||| |||||||||||  |||||||||||||||||| |||||| || || |||| |||||| |||| |||||| ||||||| ||||||||||||||||     
T  29671434 ctgaatatgtatcatttgcatctttttcatatgaaaatggaaaactttaatgataatatggaaaaagtactttttgaaaatatgtggaaccatgcagagg 29671335  T
Q  170 ttgactttggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagag 258  Q
    |||| |||||||  ||||||  | | |||||||| ||| ||| |||||||||||||| ||||||||||||| |||||||||| ||||||    
T  29671334 ttgattttggattaccattccagaaaagtggaattcatgtatcgaaagagaaaagtaacatgaaggatattagattcaccaatccagag 29671246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 78 - 290
Target Start/End: Complemental strand, 29800020 - 29799807
Alignment:
Q  78 gtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgacttt 177  Q
    |||||||||  ||||||| |||||| ||| |||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||||| || || |||||    
T  29800020 gtatcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttacttt 29799921  T
Q  178 ggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagaga-ctaatgctaacattgtg 276  Q
    |||| |  ||||    | |||||||||||| |||||||||  ||||||| |||||||||||||||||||| | |||||| ||  | ||||||||||||||    
T  29799920 ggattcaaattccataaaagtggaatccatgtattgaaagctaaaagtaacatgaaggatattcgattcagcgacccagggagttgatgctaacattgtg 29799821  T
Q  277 ttacgctcgggatg 290  Q
    |||| |||||||||    
T  29799820 ttacactcgggatg 29799807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 78 - 290
Target Start/End: Complemental strand, 28487608 - 28487394
Alignment:
Q  78 gtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgacttt 177  Q
    |||||||||  ||||||| |||||| ||| |||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||||| || || |||||    
T  28487608 gtatcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttacttt 28487509  T
Q  178 ggatccccattcatgtatagtggaatccatatattgaaaga-gaaaagtagcatgaaggatattcgattcaccaacccagaga-ctaatgctaacattgt 275  Q
    |||| |  ||||    | |||||||||||| ||||||||||  ||||||| |||||||||||||||||||| | |||||| ||  | |||||||||||||    
T  28487508 ggattcaaattccataaaagtggaatccatgtattgaaagactaaaagtaacatgaaggatattcgattcagcgacccagggagttgatgctaacattgt 28487409  T
Q  276 gttacgctcgggatg 290  Q
    ||||| |||||||||    
T  28487408 gttacactcgggatg 28487394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 29741397 - 29741318
Alignment:
Q  142 ttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatccatatattgaaagagaa 221  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||| |||||||||||||    
T  29741397 ttagaaaataagtggaaccatgcagaggttgactttggattcccgttcatgtatagcggaatccatgtattgaaagagaa 29741318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 29704953 - 29704908
Alignment:
Q  212 tgaaagagaaaagtagcatgaaggatattcgattcaccaacccaga 257  Q
    ||||||||||||||| ||||||||||||| ||||||  ||||||||    
T  29704953 tgaaagagaaaagtaacatgaaggatatttgattcagtaacccaga 29704908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 89 - 290
Target Start/End: Original strand, 618871 - 619072
Alignment:
Q  89 atctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccatt 188  Q
    |||||||||||||| ||| | |  | ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||    
T  618871 atctttttcatatgcaaatgaagtacttcaatgataatatggacaaagcacttttagaaaataagtggaatcatgcagaggttgactttggattcccatt 618970  T
Q  189 catgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcggga 288  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||||  |||||||||| | |||||||||||||||||| | |||||    
T  618971 catgtatagtggaatccatgtattggaagagaaaagtaacatgaaagatattcgattcagtaacccagagattgatgctaacattgtgttacacccggga 619070  T
Q  289 tg 290  Q
    ||    
T  619071 tg 619072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 76 - 286
Target Start/End: Original strand, 12592388 - 12592601
Alignment:
Q  76 atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact 175  Q
    |||||||||||  |||||||||||||| ||| ||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || | |    
T  12592388 atgtatcatttgcatctttttcatatgcaaatggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatgcagaggtttatt 12592487  T
Q  176 ttgga---tccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacat 272  Q
    ||||    ||  ||||||||||||||||||||||| |||||||||| ||||  | |||| |||||||||||||||||||||||| || | ||||||||||    
T  12592488 ttggtgtctctgcattcatgtatagtggaatccatgtattgaaagataaaaacaacatggaggatattcgattcaccaacccagcgagtgatgctaacat 12592587  T
Q  273 tgtgttacgctcgg 286  Q
    |||||||| |||||    
T  12592588 tgtgttacactcgg 12592601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 208858 - 208618
Alignment:
Q  18 caatggcaatacatttttctatacatatgatgagaagatacgtatgtca---cgactgaaaatgtatcatttaaatctttttcatatgaaaagggaaaaa 114  Q
    ||||||||||||||||||||||||| |||||  |||||||  || ||||   || | | | |||||||||||  |||||||||||||| ||| ||||||     
T  208858 caatggcaatacatttttctatacacatgattcgaagatagataggtcatcacggccggacatgtatcatttgcatctttttcatatgcaaatggaaaac 208759  T
Q  115 ttcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatccatatattga 214  Q
    ||||| || | ||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||  | ||||| || | |||||||||||| ||||||    
T  208758 ttcaatgaaaatatggacaaagcactctcagaaaataagtggaatcatgcagagcttgattttggactctcattcctggaaagtggaatccatgtattga 208659  T
Q  215 aagagaaaagtagcatgaaggatattcgattcaccaaccca 255  Q
    |||||| |||||||||||| ||||||||||||| |||||||    
T  208658 aagagagaagtagcatgaacgatattcgattcatcaaccca 208618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 5918407 - 5918229
Alignment:
Q  81 tcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttgga 180  Q
    ||||||| || ||||||||||| |||  ||||||||||| |||  | ||||   |||||||||||||||| ||||||||||||  |   ||||||||||     
T  5918407 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg 5918308  T
Q  181 tccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagaga 259  Q
    |    ||||    | |||||||||||| | ||||||||||||||||| |||| |||||| | ||||||||| |||||||    
T  5918307 tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagaga 5918229  T

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