View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18937_low_14 (Length: 303)
Name: NF18937_low_14
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18937_low_14 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 1191663 - 1191829
Alignment:
| Q |
137 |
ttctgggtaacgttacaacaacctttcaacagtctctttctcaaacctcgttccagcattgccaataaagctattaccaggctctggttttcgaactctc |
236 |
Q |
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| T |
1191663 |
ttctgggcaacgttacaacaacctttcaacagtctctttctcaaacctcgttccagcattgccaataaagctattaccaggctctggttttcgaactctc |
1191762 |
T |
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| Q |
237 |
ctttcttgcattgatcctctcttgcttgcatacatgttccaattccaatagatgttttcttagcttc |
303 |
Q |
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| T |
1191763 |
ctttcttgcattgatcctctcttgcttgcatacatattccaattccaatagatgttttcttaccttc |
1191829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 1191481 - 1191606
Alignment:
| Q |
1 |
ataaaagaaaaaacaatagtactattttccaaaataaggattccaattccacaaaaatgtattttgtataaatgacaatatttcaaaaactgtagttgta |
100 |
Q |
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| T |
1191481 |
ataaaagaaaaaacaatagtactattttccaaaataaggattccaattccacaaaaatgtattttgtataaataacaatatttcaaaaactgtagttgga |
1191580 |
T |
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| Q |
101 |
acctgaataattacaagaccaactat |
126 |
Q |
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| T |
1191581 |
acctgaataattacaagaccaactat |
1191606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 155060 - 155181
Alignment:
| Q |
1 |
ataaaagaaaaaacaatagtactattttccaaaataaggattccaattccacaaaaatgtattttgtataaatgacaatatttcaaaaactgtagttgta |
100 |
Q |
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| T |
155060 |
ataaaagaaaaaactatagtactattttccaaaataaggattccaattccacaaaaatgtatttagtataaataacaatatttcaaaaactgtagttgga |
155159 |
T |
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| Q |
101 |
acctgaataattacaagaccaa |
122 |
Q |
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| T |
155160 |
acctgaataattacaataccaa |
155181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 140 - 258
Target Start/End: Original strand, 155227 - 155345
Alignment:
| Q |
140 |
tgggtaacgttacaacaacctttcaacagtctctttctcaaacctcgttccagcattgccaataaagctattaccaggctctggttttcgaactctcctt |
239 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
155227 |
tgggtaacgttacaacaacctttcaacaatctctttctcaaacctcgttccaggaatgccaataaagctattaccaggctctggtttccgaactctcctt |
155326 |
T |
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| Q |
240 |
tcttgcattgatcctctct |
258 |
Q |
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| T |
155327 |
tcttgcattgatcttctct |
155345 |
T |
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