View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18937_low_18 (Length: 250)

Name: NF18937_low_18
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18937_low_18
NF18937_low_18
[»] chr3 (5 HSPs)
chr3 (40-172)||(52396460-52396595)
chr3 (195-236)||(52396393-52396434)
chr3 (209-238)||(28207062-28207091)
chr3 (209-238)||(28208089-28208118)
chr3 (209-238)||(43930744-43930773)
[»] chr7 (3 HSPs)
chr7 (206-236)||(13771642-13771672)
chr7 (209-238)||(1831924-1831953)
chr7 (133-170)||(1831998-1832035)
[»] chr1 (4 HSPs)
chr1 (209-243)||(5560956-5560990)
chr1 (209-238)||(37193562-37193591)
chr1 (209-238)||(52084769-52084798)
chr1 (209-237)||(44311291-44311319)
[»] chr8 (3 HSPs)
chr8 (209-238)||(28574623-28574652)
chr8 (206-235)||(28575059-28575088)
chr8 (206-238)||(3252244-3252276)
[»] chr6 (1 HSPs)
chr6 (133-170)||(6000690-6000727)
[»] chr4 (2 HSPs)
chr4 (209-238)||(29249653-29249682)
chr4 (206-238)||(46427190-46427222)
[»] chr2 (4 HSPs)
chr2 (209-238)||(21904009-21904038)
chr2 (209-238)||(38876074-38876103)
chr2 (209-238)||(38876965-38876994)
chr2 (210-238)||(11101179-11101207)
[»] scaffold0176 (1 HSPs)
scaffold0176 (206-238)||(230-262)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 52396595 - 52396460
Alignment:
Q  40 ctttaactattttaaaattagcaactttgatgattacataaataaataaagagattgtttgcacctttttatgaatt-ttttgtt--nnnnnnnnnggtt 136  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||           ||||    
T  52396595 ctttaactattttaaaattagcaactttgataattacataaataaataaagagattgtttccacctttttatgaatttttttgttaaaaaagaaatggtt 52396496  T
Q  137 attagggctttaccccctgtaatatagagcacttct 172  Q
    | ||||||||||||||||||||||||||||||||||    
T  52396495 aatagggctttaccccctgtaatatagagcacttct 52396460  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 52396434 - 52396393
Alignment:
Q  195 agatgtcatctttataaaataaagattcttcaagattgcccc 236  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  52396434 agatgtcatccttataaaataaagattcttcaagattgcccc 52396393  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 28207062 - 28207091
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  28207062 taaaataaagattcttcaagattgccccct 28207091  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 28208118 - 28208089
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  28208118 taaaataaagattcttcaagattgccccct 28208089  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 43930773 - 43930744
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  43930773 taaaataaagattcttcaagattgccccct 43930744  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 236
Target Start/End: Original strand, 13771642 - 13771672
Alignment:
Q  206 ttataaaataaagattcttcaagattgcccc 236  Q
    |||||||||||||||||||||||||||||||    
T  13771642 ttataaaataaagattcttcaagattgcccc 13771672  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 1831953 - 1831924
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  1831953 taaaataaagattcttcaagattgccccct 1831924  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 1832035 - 1831998
Alignment:
Q  133 ggttattagggctttaccccctgtaatatagagcactt 170  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  1832035 ggttaatagggctttaccccctgtaatatagggcactt 1831998  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 5560956 - 5560990
Alignment:
Q  209 taaaataaagattcttcaagattgccccctttgct 243  Q
    |||||||||||||||||||||||||||||| ||||    
T  5560956 taaaataaagattcttcaagattgccccctatgct 5560990  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 37193562 - 37193591
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  37193562 taaaataaagattcttcaagattgccccct 37193591  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 52084798 - 52084769
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  52084798 taaaataaagattcttcaagattgccccct 52084769  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 44311291 - 44311319
Alignment:
Q  209 taaaataaagattcttcaagattgccccc 237  Q
    |||||||||||||||||||||||||||||    
T  44311291 taaaataaagattcttcaagattgccccc 44311319  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 28574623 - 28574652
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  28574623 taaaataaagattcttcaagattgccccct 28574652  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 28575088 - 28575059
Alignment:
Q  206 ttataaaataaagattcttcaagattgccc 235  Q
    ||||||||||||||||||||||||||||||    
T  28575088 ttataaaataaagattcttcaagattgccc 28575059  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 3252244 - 3252276
Alignment:
Q  206 ttataaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||| |||||||||||    
T  3252244 ttataaaataaagattcttcacgattgccccct 3252276  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 6000727 - 6000690
Alignment:
Q  133 ggttattagggctttaccccctgtaatatagagcactt 170  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  6000727 ggttaatagagctttaccccctgtaatatagagcactt 6000690  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 29249682 - 29249653
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  29249682 taaaataaagattcttcaagattgccccct 29249653  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 46427222 - 46427190
Alignment:
Q  206 ttataaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||| |||||||||||||||    
T  46427222 ttataaaataaagattcatcaagattgccccct 46427190  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 21904009 - 21904038
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  21904009 taaaataaagattcttcaagattgccccct 21904038  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 38876074 - 38876103
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  38876074 taaaataaagattcttcaagattgccccct 38876103  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 38876994 - 38876965
Alignment:
Q  209 taaaataaagattcttcaagattgccccct 238  Q
    ||||||||||||||||||||||||||||||    
T  38876994 taaaataaagattcttcaagattgccccct 38876965  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 11101179 - 11101207
Alignment:
Q  210 aaaataaagattcttcaagattgccccct 238  Q
    |||||||||||||||||||||||||||||    
T  11101179 aaaataaagattcttcaagattgccccct 11101207  T

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Target: scaffold0176 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 262 - 230
Alignment:
Q  206 ttataaaataaagattcttcaagattgccccct 238  Q
    ||||||||| |||||||||||||||||||||||    
T  262 ttataaaatgaagattcttcaagattgccccct 230  T

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