View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18937_low_19 (Length: 248)
Name: NF18937_low_19
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18937_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 30304090 - 30303863
Alignment:
| Q |
18 |
ccaaactcgttggaatagataggttcgcgacttctcaagttgaatggtgcagattcggaggatgcactcctccta---gagctagatttggcatgtctgc |
114 |
Q |
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| T |
30304090 |
ccaaactcgttggaatagataggtttgcgacttctcaagttgaatggtgcagattcggaggatgcactcctcctactagagctagatttggcatgtctgc |
30303991 |
T |
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| Q |
115 |
tcaattcttcaatctgttcccttgatacttttactattacatttgcttcctggctctgcttatgtctcctatccctaaggcctctcctgtgcggctcttg |
214 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30303990 |
tcaattcctcaatctgttcccttgatacttttactattacatttgcttcctggctctgcttatgtctcctatccctaaggcctctcctgtgcggatcttg |
30303891 |
T |
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| Q |
215 |
ctcctgctcttctataagcaccctctct |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
30303890 |
ctcctgctcttctataagcaccctctct |
30303863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 65 - 242
Target Start/End: Complemental strand, 30291386 - 30291206
Alignment:
| Q |
65 |
tgcagattcggaggatgcactcctcctagagctagatttggcatgtctgctcaattcttcaatctgttcccttgatacttttactattacatttgcttcc |
164 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
30291386 |
tgcagattcggaggatgcactccttctagagctagatttggcatgtctgctcaattcctcaatctgttcccttgacactttgactattacatttgcttcc |
30291287 |
T |
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| Q |
165 |
tggctctgcttatgtctcctatccctaaggcctctcctgt---gcggctcttgctcctgctcttctataagcaccctctct |
242 |
Q |
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| T |
30291286 |
tggctctgcttatgtctcctatccctaaggcctctcctgtgtcgtggctcttgctcctgctcttctataagcaccctctct |
30291206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 30298884 - 30298657
Alignment:
| Q |
18 |
ccaaactcgttggaatagataggttcgcgacttctcaagttgaatggtgcagattcggaggatgcactcctcctagagctagatttggcatgtctgctca |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||||||||||| |
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| T |
30298884 |
ccaaactcgttggaatagataggttcgcggcttctcaagttgaatggtgcagattcggaggatccactccttctggagctagattttgcatgtctgctca |
30298785 |
T |
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| Q |
118 |
attcttcaatctgttcccttgatacttttactattacatttgcttcctggctctgcttatgtctcctatc---cctaaggcctctcctgtgc---ggctc |
211 |
Q |
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|||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||| ||||| |
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| T |
30298784 |
attcctcaatctgttctcttgatactttgactattacatttgaatcctggctctgct---gcctcctatctttcctaaggcctctcctgtgttgtggctc |
30298688 |
T |
|
| Q |
212 |
ttgctcctgctcttctataagcaccctctct |
242 |
Q |
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||| || |||||||||||||||||||||||| |
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| T |
30298687 |
ttgttcatgctcttctataagcaccctctct |
30298657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 30314926 - 30314786
Alignment:
| Q |
65 |
tgcagattcggaggatgcactcctcctagagctagatttggcatgtctgctcaattcttcaatctgttcccttgatacttttactattacatttgcttcc |
164 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||| |
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| T |
30314926 |
tgcagattcggaggatgcactccttctagagctagatttggcatgtctgctcaattcctcaatctgttcccttgacactttgactattacatctgcttcc |
30314827 |
T |
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| Q |
165 |
tggctctgcttatgtctcctatccctaaggcctctcctgtg |
205 |
Q |
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| T |
30314826 |
tggctctgcttatgtctcctatccctaaggcctctcctgtg |
30314786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 30286422 - 30286192
Alignment:
| Q |
18 |
ccaaactcgttggaatagataggttcgcgacttctcaagttgaatggtgcagattcggaggatgcactcctcctagagctagatttggcatgtctgctca |
117 |
Q |
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||||||| |||||| |||||||||| | |||||||||||| |||| ||||||| || ||| ||||||| || |||||||| ||||||| | |||||| |
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| T |
30286422 |
ccaaacttgttggagtagataggtttctggtttctcaagttgattggttcagattcagaagattcactccttctggagctagacttggcatttttgctca |
30286323 |
T |
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| Q |
118 |
attcttcaatctgttcccttgatacttttactattacatttgcttcctggctctgcttatgtctcctatc------cctaaggcctctcctg---tgcgg |
208 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||| || || |
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| T |
30286322 |
gttcttcaatctgttctcttgatacttttactattacatttgcttcctggctctgc---tgcctcctttcatccttcctaaggcctctcctgtgttgtgg |
30286226 |
T |
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| Q |
209 |
ctcttgctcctgctcttctataagcaccctctct |
242 |
Q |
| |
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|||||| || | |||||||||||||||||||||| |
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| T |
30286225 |
ctcttgttcattctcttctataagcaccctctct |
30286192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 30291463 - 30291387
Alignment:
| Q |
18 |
ccaaactcgttggaatagataggttcgcgacttctcaagttgaatggtgcagattcggaggatgcactcctcctaga |
94 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30291463 |
ccaaactcgttggaatagataggttcacggcttctcaagttgaatggtgcagattcggaggatgcactccttctaga |
30291387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 30315003 - 30314927
Alignment:
| Q |
18 |
ccaaactcgttggaatagataggttcgcgacttctcaagttgaatggtgcagattcggaggatgcactcctcctaga |
94 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30315003 |
ccaaactcgttggaatagataggttcatggcttctcaagttgaatggtgcagattcggaggatgcactccttctaga |
30314927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 46809757 - 46809603
Alignment:
| Q |
18 |
ccaaactcgttggaatagataggttcgcgacttctcaagttgaatggtgcagattcggaggatgcactcctcctagagctagatttggcatgtctgctca |
117 |
Q |
| |
|
||||||| ||||||||||| || | ||| ||||||||||||| ||| |||| || |||||| || ||| | ||||| |||||||||||||| |||| |
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| T |
46809757 |
ccaaacttgttggaatagagggggttgcggtttctcaagttgaagggtccagactcagaggatatgcttctctttgagcttgatttggcatgtctcctca |
46809658 |
T |
|
| Q |
118 |
attcttcaatctgttcccttgatacttttactattacatttgcttcctggctctg |
172 |
Q |
| |
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||| ||||||||||| ||||| ||||| |||||| |||| ||||| |||||||| |
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|
| T |
46809657 |
gttcctcaatctgttctcttgacactttgactattgcattagcttcttggctctg |
46809603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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