View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18937_low_3 (Length: 593)

Name: NF18937_low_3
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18937_low_3
NF18937_low_3
[»] chr7 (5 HSPs)
chr7 (211-576)||(44348390-44348755)
chr7 (1-191)||(44348210-44348400)
chr7 (482-548)||(24967136-24967202)
chr7 (415-468)||(18749834-18749887)
chr7 (423-471)||(42281528-42281576)
[»] chr8 (4 HSPs)
chr8 (340-438)||(4558722-4558821)
chr8 (502-547)||(18356414-18356458)
chr8 (482-538)||(7918720-7918776)
chr8 (398-469)||(12361174-12361246)
[»] chr3 (2 HSPs)
chr3 (423-542)||(37273142-37273269)
chr3 (488-548)||(45590732-45590792)
[»] chr4 (4 HSPs)
chr4 (412-470)||(7694025-7694083)
chr4 (423-512)||(18628518-18628605)
chr4 (413-470)||(35064853-35064910)
chr4 (488-548)||(35743350-35743410)
[»] chr1 (4 HSPs)
chr1 (332-389)||(7200939-7200996)
chr1 (414-470)||(6102153-6102209)
chr1 (415-471)||(2522629-2522685)
chr1 (413-469)||(17778955-17779011)
[»] chr6 (5 HSPs)
chr6 (338-389)||(2514624-2514675)
chr6 (483-542)||(33385605-33385664)
chr6 (398-467)||(25426152-25426222)
chr6 (489-542)||(25103233-25103286)
chr6 (326-375)||(33823391-33823440)
[»] chr2 (3 HSPs)
chr2 (483-542)||(17443543-17443602)
chr2 (423-469)||(43205317-43205363)
chr2 (345-389)||(38239648-38239692)
[»] chr5 (1 HSPs)
chr5 (413-469)||(32703292-32703348)


Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 211 - 576
Target Start/End: Original strand, 44348390 - 44348755
Alignment:
Q  211 aaattgcgacttcaagttagagtcaattttggaaggaaaatcattcctattcaaaaaaggcatccagttataagaaaacacaatttggactcctccaaaa 310  Q
    |||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348390 aaattgaggcttcaagttagagtcaattttggaaggaaaatcagtcctattcaaaaaaggcatccagttataagaaaacacaatttggactcctccaaaa 44348489  T
Q  311 tagaaacaaacatacacttaattaatcgcttattatgtaagtgtttaagtataagctatttctatgatagaagataaaaatagattgaattgttttcatg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348490 tagaaacaaacatacacttaattaatcgcttattatgtaagtgtttaagtataagctatttctatgatagaagataaaaatagattgaattgttttcatg 44348589  T
Q  411 tagctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaacaaacttgtcataattgttttcataaactcttccaaacagtct 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348590 tagctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaacaaacttgtcataattgttttcataaactcttccaaacagtct 44348689  T
Q  511 caacaatgcttatactagtagataagttcaaaaaagtccttgtaatgcaaacaaactatgagtatt 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348690 caacaatgcttatactagtagataagttcaaaaaagtccttgtaatgcaaacaaactatgagtatt 44348755  T

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Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 44348210 - 44348400
Alignment:
Q  1 tacatttgagaagtgttgatttgaatatttgttggcaaactgaaaaggtaacttgaatatgtttgtgtttagataaacaatttaatgtttgtttggtttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44348210 tacatttgagaagtgttgatttgaatatttgttggcaaactgaaaaggtaacttgattatgtttgtgtttagataaacaatttaatgtttgtttggtttt 44348309  T
Q  101 gccgcaacaaaaactaaaagtgatttgaatgtgaatcactttatgtttggatacattcacgtaacatgagttgaacaagaaaattgaggct 191  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348310 gctgcaacaaaaactaaaagtgatttgaatgtgaatcactttatgtttggatacattcacgtaacatgagttgaacaagaaaattgaggct 44348400  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 482 - 548
Target Start/End: Original strand, 24967136 - 24967202
Alignment:
Q  482 ttgttttcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaaaaagtc 548  Q
    |||||| ||||| ||||||||||||||||||  |||| ||||||||||||||||| |||||||||||    
T  24967136 ttgtttccataatctcttccaaacagtctcataaatgtttatactagtagataagctcaaaaaagtc 24967202  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 468
Target Start/End: Complemental strand, 18749887 - 18749834
Alignment:
Q  415 tataagccgttttcataagttatcacggagaatttatagaaataagttgaaaac 468  Q
    ||||||| ||||||||||| ||||||||| || |||| |||||||| |||||||    
T  18749887 tataagctgttttcataagctatcacggaaaacttatggaaataagctgaaaac 18749834  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 471
Target Start/End: Complemental strand, 42281576 - 42281528
Alignment:
Q  423 gttttcataagttatcacggagaatttatagaaataagttgaaaacaaa 471  Q
    ||||||||||| |||||| ||||  ||||||||||||| ||||||||||    
T  42281576 gttttcataagctatcactgagagcttatagaaataagctgaaaacaaa 42281528  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 438
Target Start/End: Original strand, 4558722 - 4558821
Alignment:
Q  340 ttattatgtaagtgtttaagtataagctatttctatgatagaagataaaaatagattgaattgttttcatgta-gctataagccgttttcataagttatc 438  Q
    |||||||||||||||||| ||||||||||||||||| ||| |||||||||  |  || |||| ||||||| || ||||||||| |||| |||||| ||||    
T  4558722 ttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctatc 4558821  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 547
Target Start/End: Original strand, 18356414 - 18356458
Alignment:
Q  502 aaacagtctcaacaatgcttatactagtagataagttcaaaaaagt 547  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  18356414 aaacagtctca-caatgcttatactagtagataagttcaaataagt 18356458  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 538
Target Start/End: Complemental strand, 7918776 - 7918720
Alignment:
Q  482 ttgttttcataaactcttccaaacagtctcaacaatgcttatactagtagataagtt 538  Q
    |||||||||||| |||| |||||||||||||  | || |||| ||||||||||||||    
T  7918776 ttgttttcataagctctcccaaacagtctcacaagtgtttatgctagtagataagtt 7918720  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 469
Target Start/End: Original strand, 12361174 - 12361246
Alignment:
Q  398 aattgttttcatgta-gctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaaca 469  Q
    |||||||||||| || ||||||||| |||||||||||||||   |||||  | || |||||||||||||||||    
T  12361174 aattgttttcatataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaaca 12361246  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 423 - 542
Target Start/End: Original strand, 37273142 - 37273269
Alignment:
Q  423 gttttcataagttatcacggagaatttatagaaataagttgaaaacaa-------acttgtcataa-ttgttttcataaactcttccaaacagtctcaac 514  Q
    ||||||||||| ||||  |||||| |||| ||||||||||||||||||       || |||||||| |||||| ||||| |||| ||||||||||||| |    
T  37273142 gttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcacc 37273241  T
Q  515 aatgcttatactagtagataagttcaaa 542  Q
    | ||||||| ||| || |||||||||||    
T  37273242 agtgcttatgctaataaataagttcaaa 37273269  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 548
Target Start/End: Original strand, 45590732 - 45590792
Alignment:
Q  488 tcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaaaaagtc 548  Q
    |||||| |||| |||||||||||||  | ||||||| ||||||||||||||||||||||||    
T  45590732 tcataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtc 45590792  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 470
Target Start/End: Complemental strand, 7694083 - 7694025
Alignment:
Q  412 agctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaacaa 470  Q
    |||||||||| ||||||||||||||||  ||||| ||||| |||||||| |||||||||    
T  7694083 agctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaa 7694025  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 512
Target Start/End: Complemental strand, 18628605 - 18628518
Alignment:
Q  423 gttttcataagttatcacggagaatttatagaaataagttgaaaacaaacttgtcataa-ttgttttcataaactcttccaaacagtctca 512  Q
    ||||||||||||||||  |||||  |||| |||||||| ||||||| ||||  |||||| |||||||||||| |||| |||||||||||||    
T  18628605 gttttcataagttatcttggagagcttatggaaataagctgaaaac-aact--tcataagttgttttcataagctctcccaaacagtctca 18628518  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Original strand, 35064853 - 35064910
Alignment:
Q  413 gctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaacaa 470  Q
    |||||| || ||||||||||| ||||| ||||| ||||| |||||||| |||||||||    
T  35064853 gctatatgctgttttcataagatatcatggagagtttatggaaataagctgaaaacaa 35064910  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 548
Target Start/End: Original strand, 35743350 - 35743410
Alignment:
Q  488 tcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaaaaagtc 548  Q
    |||||| |||||| |||||||||||  |||||||||| ||||||||||  ||||| |||||    
T  35743350 tcataagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtc 35743410  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 7200996 - 7200939
Alignment:
Q  332 ttaatcgcttattatgtaagtgtttaagtataagctatttctatgatagaagataaaa 389  Q
    |||||||||||| |||||||||||||  ||||||||||||| || ||| |||||||||    
T  7200996 ttaatcgcttatcatgtaagtgtttacttataagctatttccataataaaagataaaa 7200939  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 470
Target Start/End: Original strand, 6102153 - 6102209
Alignment:
Q  414 ctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaacaa 470  Q
    |||||||| ||||||||||| ||||  ||||||||||| |||||||| |||||||||    
T  6102153 ctataagctgttttcataagctatctgggagaatttatggaaataagctgaaaacaa 6102209  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 471
Target Start/End: Original strand, 2522629 - 2522685
Alignment:
Q  415 tataagccgttttcataagttatcacggagaatttatagaaataagttgaaaacaaa 471  Q
    ||||||| ||||||||||  |||   ||||||||||| |||||||||||||||||||    
T  2522629 tataagctgttttcataaactattctggagaatttatggaaataagttgaaaacaaa 2522685  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 469
Target Start/End: Original strand, 17778955 - 17779011
Alignment:
Q  413 gctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaaca 469  Q
    ||||||||| ||||||||||| ||||  ||||||||| | |||||||| ||||||||    
T  17778955 gctataagcagttttcataagctatcttggagaatttttggaaataaggtgaaaaca 17779011  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 2514624 - 2514675
Alignment:
Q  338 gcttattatgtaagtgtttaagtataagctatttctatgatagaagataaaa 389  Q
    |||||| ||||||||| ||| ||||||||||||||||| ||| |||||||||    
T  2514624 gcttatcatgtaagtgcttatgtataagctatttctataataaaagataaaa 2514675  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 542
Target Start/End: Original strand, 33385605 - 33385664
Alignment:
Q  483 tgttttcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaa 542  Q
    ||||| |||||||||||||||||||| |||  | ||||||||  ||||||||||||||||    
T  33385605 tgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaa 33385664  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 467
Target Start/End: Original strand, 25426152 - 25426222
Alignment:
Q  398 aattgttttcatgta-gctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaa 467  Q
    ||||| ||||||||| |||||||||  |||| ||||| ||||  |||||||||||||||||||||| ||||    
T  25426152 aattgctttcatgtaagctataagctatttttataagctatcctggagaatttatagaaataagttaaaaa 25426222  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 542
Target Start/End: Complemental strand, 25103286 - 25103233
Alignment:
Q  489 cataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaa 542  Q
    |||||||||||||||||||||||| || ||||||| | | |||||||| |||||    
T  25103286 cataaactcttccaaacagtctcagcactgcttatgccaatagataagctcaaa 25103233  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 33823440 - 33823391
Alignment:
Q  326 acttaattaatcgcttattatgtaagtgtttaagtataagctatttctat 375  Q
    |||||||||| |||||||||| ||| |||||| | |||||||||||||||    
T  33823440 acttaattaaacgcttattatataaatgtttatgcataagctatttctat 33823391  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 542
Target Start/End: Complemental strand, 17443602 - 17443543
Alignment:
Q  483 tgttttcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaa 542  Q
    ||||| ||||||||||||||||||||||||  | ||||||||  |||| |||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaa 17443543  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 469
Target Start/End: Original strand, 43205317 - 43205363
Alignment:
Q  423 gttttcataagttatcacggagaatttatagaaataagttgaaaaca 469  Q
    ||||||||||| |||||||||||  |||| |||||||||||||||||    
T  43205317 gttttcataagctatcacggagagcttatggaaataagttgaaaaca 43205363  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 38239692 - 38239648
Alignment:
Q  345 atgtaagtgtttaagtataagctatttctatgatagaagataaaa 389  Q
    ||||||||||||| ||||||||||||||||| | | |||||||||    
T  38239692 atgtaagtgtttatgtataagctatttctataacaaaagataaaa 38239648  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 469
Target Start/End: Complemental strand, 32703348 - 32703292
Alignment:
Q  413 gctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaaca 469  Q
    ||||||||  ||||||||||| ||||  |||||||||||| ||||||| ||||||||    
T  32703348 gctataagttgttttcataagctatctaggagaatttataaaaataagctgaaaaca 32703292  T

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