View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18937_low_4 (Length: 528)

Name: NF18937_low_4
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18937_low_4
NF18937_low_4
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-519)||(75319-75838)
[»] chr3 (1 HSPs)
chr3 (1-116)||(619049-619164)
[»] chr6 (13 HSPs)
chr6 (21-151)||(29704744-29704873)
chr6 (1-51)||(29718259-29718309)
chr6 (1-57)||(28487361-28487417)
chr6 (1-57)||(29689073-29689129)
chr6 (1-57)||(29799774-29799830)
chr6 (2-46)||(29711646-29711690)
chr6 (422-509)||(28484679-28484766)
chr6 (435-518)||(29715155-29715238)
chr6 (422-509)||(29797091-29797178)
chr6 (422-503)||(28500408-28500489)
chr6 (453-518)||(29708014-29708079)
chr6 (422-503)||(29812819-29812900)
chr6 (19-56)||(29671188-29671225)
[»] chr8 (1 HSPs)
chr8 (1-57)||(12592582-12592638)
[»] scaffold0012 (1 HSPs)
scaffold0012 (163-232)||(235903-235972)


Alignment Details
Target: scaffold0007 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 75319 - 75838
Alignment:
Q  1 taacattgtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75319 taacattgtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtt 75418  T
Q  101 tcattattttatgatagtttttaccatgtgttcacaattataggctggactgtataatctttatgtaacttggtttcgtaatgcaggtaaaagagagcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75419 tcattattttatgatagtttttaccatgtgttcacaattataggctggactgtataatctttatgtaacttggtttcgtaatgcaggtaaaagagagcat 75518  T
Q  201 cggtcagtcttttataaaatcaacccaaacaaagaattcctcatcttttgggaaaaccaaccaaaaccataaaaattcctcatctttgccagatctatag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75519 cggtcagtcttttataaaatcaacccaaacaaagaattcctcatcttttgggaaaaccaaccaaaaccataaaaattcctcatctttgccagatctatag 75618  T
Q  301 ttaatgtgactcactcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgca-nnnnnnnnaaatgtt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||    
T  75619 ttaatgtgactcactcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgcatttttttttaaatgtt 75718  T
Q  400 tggtagaaaaatataatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75719 tggtagaaaaatataatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgt 75818  T
Q  500 tactattctcacaggttctg 519  Q
    ||||||||||||| ||||||    
T  75819 tactattctcacatgttctg 75838  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 619049 - 619164
Alignment:
Q  1 taacattgtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtt 100  Q
    |||||||||||||| | ||||||||| ||||||| | |||||||||||||| |||||||| | ||||||||||||||| ||| ||||||| |||||||||    
T  619049 taacattgtgttacacccgggatgttaaagtaagtacatcattcattttacccaaattgtcataaagctttcttcttgtagtgtagaatgttaatttgtt 619148  T
Q  101 tcattattttatgata 116  Q
    | || ||||| |||||    
T  619149 taataattttttgata 619164  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 29704873 - 29704744
Alignment:
Q  21 gatgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattattttatgatagttt 120  Q
    |||||||||||||| ||||||||||||||||| ||||||| | ||| ||| |||| || | | || ||   |||||||||||| ||||||||||||| |     
T  29704873 gatgttgaagtaagtatatcattcattttacg-aaattgtcataaatcttgcttcctgtaatgtaaaaaattaatttgtttcactattttatgatagatc 29704775  T
Q  121 ttaccatgtgttcacaattataggctggact 151  Q
    || | ||||||||||||||||||| ||||||    
T  29704774 tttctatgtgttcacaattataggttggact 29704744  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29718309 - 29718259
Alignment:
Q  1 taacattgtgttacgctcgggatgttgaagtaagcatatcattcattttac 51  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  29718309 taacattgtgttacactcgggatgttgaagtaagtatatcattcattttac 29718259  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 28487417 - 28487361
Alignment:
Q  1 taacattgtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat 57  Q
    |||||||||||||| |||||||||||| |||||| |||||||||||||||| |||||    
T  28487417 taacattgtgttacactcgggatgttgtagtaagtatatcattcattttacccaaat 28487361  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29689129 - 29689073
Alignment:
Q  1 taacattgtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat 57  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||||| |||||    
T  29689129 taacattgtgttacactcgggattttgaagtaagtatatcattcattttacccaaat 29689073  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29799830 - 29799774
Alignment:
Q  1 taacattgtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat 57  Q
    |||||||||||||| |||||||||||| |||||| |||||||||||||||| |||||    
T  29799830 taacattgtgttacactcgggatgttgtagtaagtatatcattcattttacccaaat 29799774  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 29711690 - 29711646
Alignment:
Q  2 aacattgtgttacgctcgggatgttgaagtaagcatatcattcat 46  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||    
T  29711690 aacattgtgttacactcgggatgttgaagtaagtatatcattcat 29711646  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 509
Target Start/End: Complemental strand, 28484766 - 28484679
Alignment:
Q  422 tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc 509  Q
    |||||||||||  |||||||||||||| | || || |||||||| || |||||||| || |||  ||||||||||| |||||||||||    
T  28484766 tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc 28484679  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 518
Target Start/End: Complemental strand, 29715238 - 29715155
Alignment:
Q  435 tttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct 518  Q
    |||||||||||||| |||| || |||||||| || |||||||| || |||  ||||||||||| ||||||||||| || |||||    
T  29715238 tttctttctagattgacgataataaagggatatactaactgcacttcattcattttgtattttcttactattctcccatgttct 29715155  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 509
Target Start/End: Complemental strand, 29797178 - 29797091
Alignment:
Q  422 tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc 509  Q
    |||||||||||  |||||||||||||| | || || |||||||| || |||||||| || |||  ||||||||||| |||||||||||    
T  29797178 tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc 29797091  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 422 - 503
Target Start/End: Complemental strand, 28500489 - 28500408
Alignment:
Q  422 tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact 503  Q
    |||||||||||  | |||||||||||| ||||| ||||||||||||| ||||| || || |||  ||||||||||| |||||    
T  28500489 tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact 28500408  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 518
Target Start/End: Complemental strand, 29708079 - 29708014
Alignment:
Q  453 acaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct 518  Q
    |||||||| ||||||| |||||||| ||||||  ||||||||||| ||| |||||||||| |||||    
T  29708079 acaagaaatggatttactaactgcactttattcattttgtattttcttagtattctcacatgttct 29708014  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 422 - 503
Target Start/End: Complemental strand, 29812900 - 29812819
Alignment:
Q  422 tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact 503  Q
    |||||||||||  | |||||||||||| ||||| ||||||||||||| ||||| || || |||  ||||||||||| |||||    
T  29812900 tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact 29812819  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 29671225 - 29671188
Alignment:
Q  19 gggatgttgaagtaagcatatcattcattttacgcaaa 56  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  29671225 gggatgttgaagtaagtatatcattcattttacccaaa 29671188  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12592582 - 12592638
Alignment:
Q  1 taacattgtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat 57  Q
    |||||||||||||| ||||| ||||| ||||||| |||||||||||||||| |||||    
T  12592582 taacattgtgttacactcggaatgttaaagtaagtatatcattcattttacccaaat 12592638  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 235972 - 235903
Alignment:
Q  163 atgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcagtcttttataaaatcaacccaaacaa 232  Q
    ||||||||||| |||  |||||||||| |||||||||| ||||| ||||||  |||| ||| ||||||||    
T  235972 atgtaacttggcttctcaatgcaggtagaagagagcattggtcactcttttggaaaaccaatccaaacaa 235903  T

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