View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18937_low_5 (Length: 527)
Name: NF18937_low_5
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18937_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 509
Target Start/End: Complemental strand, 41091167 - 41090675
Alignment:
| Q |
10 |
attatacttcaagcacatatctttatctttaaattaaaataagaaagnnnnnnnnnctaacaaatcctaaaaatactctaacaaatatttaaatcttaat |
109 |
Q |
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| T |
41091167 |
attataattcaagcacatatctttatctttaaattaaaataagaaa-----aaaaactaacaaatcctaaaaatactctaacaaatatttaaatcttaat |
41091073 |
T |
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| Q |
110 |
gatattttaaggttttaatttatataaactgatggtgtaaannnnnnnaaagcatacatctaatcaaatcacacttttagattagttcctaaaaatgatt |
209 |
Q |
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| T |
41091072 |
gatattttaaggttttaatttatataaactgatggtgtaaaactttttaaagcatacatctaatcaaatcacacttttagattagttcctaaaaatgatt |
41090973 |
T |
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| Q |
210 |
ttattggatgcaaataagtactgagttgataatattgataaaatagaatcaacaacatatgaaacaacagatacaagtgaaagtagctacctggatggtg |
309 |
Q |
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| T |
41090972 |
ttattggatgcaaataagtactgagttgataatattgataaaatagaatcaacaacatatgaaacaacagatacaagtgaaagtagctacctggatggtg |
41090873 |
T |
|
| Q |
310 |
nnnnnnnnnnnnnnnnnctcggcttcaaactggacccatctggacctcattgactggctgaggtgccactaccaccggtgaaggtgaacgccaccatttg |
409 |
Q |
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| T |
41090872 |
---tcttcttcttcttcctcggcttcaaactggacccatctggacctcattgactggctgcggtgccactaccaccggtgaaggtgaacgccaccatttg |
41090776 |
T |
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| Q |
410 |
atgaagattttgtagcacttggggact-tgaaacagatgagttctacaaccacgaaaccgagagcccatgacataagaaacacgaagatgatgcgaaaga |
508 |
Q |
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| T |
41090775 |
atgaagattttgtagcaattagggactatgaaacagatgagttctacaaccacgaaaccaagagcccatgacataagaaacacgaagatgatgcgaaaga |
41090676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 41101025 - 41100951
Alignment:
| Q |
330 |
ggcttcaaactggacccatctggacctcattgactggctgaggtgccactaccaccggtgaaggtgaacgccacc |
404 |
Q |
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| T |
41101025 |
ggcttcaaactggaagcatctgggcctcattaactggctcaggtgccactgtcgccggtgagggtgaacgccacc |
41100951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 427
Target Start/End: Complemental strand, 41079423 - 41079328
Alignment:
| Q |
332 |
cttcaaactggacccatctggacctcattgactggctgaggtgccactaccaccggtgaaggtgaacgccaccatttgatgaagattttgtagcac |
427 |
Q |
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| T |
41079423 |
cttcaaactggaaccatctcgacctcattacccgtctcaggcgccactgtcgccggtgaggatgaacgccaccacttgatgaagatttcgtagcac |
41079328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 41079826 - 41079749
Alignment:
| Q |
66 |
ctaacaaatcctaaaaatactctaacaa-------atatttaaatcttaatgata-ttttaaggttttaatttatata |
135 |
Q |
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| T |
41079826 |
ctaacaaatcctaaaaatactctaacaaaatattcaaatttaaatcttaatgatacctttaaggatttaatttatata |
41079749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 41079680 - 41079650
Alignment:
| Q |
191 |
ttagttcctaaaaatgattttattggatgca |
221 |
Q |
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| T |
41079680 |
ttagttcctaaaaatgattttattggatgca |
41079650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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