View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18937_low_7 (Length: 408)
Name: NF18937_low_7
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18937_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 12819029 - 12819138
Alignment:
| Q |
217 |
gtagttgaagaagcacgaaaatgactgagtcaagtgattacacacaacagaagctatgtatatataataattaagtaattatggtaaagaagtccctaga |
316 |
Q |
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| T |
12819029 |
gtagttgaagaagcacgaaaatgactgagtcaagtgattacacacaactgaagctatgtatatataataattaagtaattatggtaaagaagtccctaga |
12819128 |
T |
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| Q |
317 |
ttcttgcaaa |
326 |
Q |
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| T |
12819129 |
ttcttgcaaa |
12819138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 12818813 - 12818959
Alignment:
| Q |
8 |
gagaagaaatgattttagagaaaaggcagccatatt------atacatataagtttttggtttccattccgaaatttgacgaacgcaaaaagcttcgtga |
101 |
Q |
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| T |
12818813 |
gagaagaaatgattttagagaaaaggcagccatatgtatatcatacatataagtttatggttttcattgcgaaatttgacaaacgaaaaaagcttcgtga |
12818912 |
T |
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| Q |
102 |
caatatgtaggcagctgagttcaaggcaaccatagaagaagtgattt |
148 |
Q |
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| T |
12818913 |
caatatataggcagctgagttcaaggcaaccatagaagaagtgattt |
12818959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 12819154 - 12819203
Alignment:
| Q |
359 |
tgttaaaaatatataagacacccaataaaatcgagagtgggaaaacattc |
408 |
Q |
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| T |
12819154 |
tgttaaaaatatataagacacccaatgaaatcgagagtgggaaaacattc |
12819203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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