View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18937_low_9 (Length: 402)
Name: NF18937_low_9
Description: NF18937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18937_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 150 - 393
Target Start/End: Complemental strand, 44770130 - 44769887
Alignment:
| Q |
150 |
tagctgttgcttttatatctaacacctactcatattctttcttgagttctcgatgtgggagaaaaaacatacgcaagaacttggttgggactcactggta |
249 |
Q |
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| T |
44770130 |
tagctgttgcttttatatctaacacctactcatattctttcttgagttctcgatgtgggacaaaaaacatacgcaagaacttggttgggactcactggta |
44770031 |
T |
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| Q |
250 |
aaatccattgtacatttgtactcatgaccctttatatattcaaacaatatagttccaaagctacaaacattgccctgtatatatatgctgaagttgttta |
349 |
Q |
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| T |
44770030 |
aaatccattgtacatttgtactcatgaccctttatattttcaaacaatatagttccaaagctacaaacattgccctgtatatatatgctgaagttgttta |
44769931 |
T |
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| Q |
350 |
ggcttcagaacttgtatcattgtagcaaccgcactttctctgtg |
393 |
Q |
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| T |
44769930 |
ggcttcagaacttgtatcattgtagcaaccgcactttccctgtg |
44769887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 44770359 - 44770231
Alignment:
| Q |
16 |
cactcataaggtttaaaaatccgccaaaaacttcaaaaccaacttgagatatatttttt-gtaaccttattaatggcatgtaaataatttattcatttgg |
114 |
Q |
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| T |
44770359 |
cactcataaggtttaaaaatccgccaaaatcttcaaaaccaacttgagatatatttttttgtaaccttattaatggcatgtaaataatttattcatttgg |
44770260 |
T |
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| Q |
115 |
atgattttatcattaggtcatatgctaca |
143 |
Q |
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| T |
44770259 |
atgattttatcattaggtcatatgctaca |
44770231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 49107090 - 49107146
Alignment:
| Q |
307 |
aagctacaaacattgccctgtatat-atatgctgaagttgtttaggcttcagaactt |
362 |
Q |
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| T |
49107090 |
aagctacaaacattgccctttctatcatatcttgaagttgtttaggcttcacaactt |
49107146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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