View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18938_low_2 (Length: 311)

Name: NF18938_low_2
Description: NF18938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18938_low_2
NF18938_low_2
[»] chr1 (1 HSPs)
chr1 (13-308)||(30900033-30900331)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 30900033 - 30900331
Alignment:
Q  13 ataaatacacatttaacatctcattttaactatatctcattttaacactctctttttctctttctctcgaggtgtacacatccatatata--acattttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  30900033 ataaatacacatttaacatctcattttaactatatctcattttaacactctctttttctctttctctcgaggtgtacacatccatatatataacattttc 30900132  T
Q  111 cataaatttatcattggaagaaaattattctggtgggacaatatgtattatatataatgtctacaaagaattatgaatcgga-gtaactttatagaaatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||    
T  30900133 cataaatttatcattggaagaaaattattctggtgggacaatatgtattatatataaagtctacaaagaattatgaatcggaagtaactctatagaaatt 30900232  T
Q  210 tattttcggagcaagtttatcatcacccatatatatcatttcatctctaattcaatttttccctctatatataatcaatctcctcacttagtggaataa 308  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30900233 tattttcggagcaagtttatcgtcacccatatatatcatttcatctctaattcaatttttccctctatatataatcaatctcctcacttagtgggataa 30900331  T

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