View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18938_low_3 (Length: 251)
Name: NF18938_low_3
Description: NF18938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18938_low_3 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 17498188 - 17497954
Alignment:
| Q |
11 |
cagagaggatcgtagggaatggcgtggttactaacatcttcatttctgccgagttatctgtataacttataagcttgtgttcagtttattaagataagtt |
110 |
Q |
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| T |
17498188 |
cagagaggatcgtagggaatggcgttgttactaacatctccatttctgccgagttatctgtataacttataagtttgtgttcagtttattaagataagtt |
17498089 |
T |
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| Q |
111 |
tctgaagnnnnnnnnnttataattatgtgcaaaagttgannnnnnnagtttatgagagaatcttatagttagaataatactcatgattattacaatatca |
210 |
Q |
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| T |
17498088 |
tctgaagaaaaa------aaaattatgtgcaaaagttgatttttttagtttataagagaatcttatagttagaataatactcataattattacaatatca |
17497995 |
T |
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| Q |
211 |
tttcaactttttctttactacaagttcttgtggaaatattt |
251 |
Q |
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| T |
17497994 |
tttcaactttttctttactacaagttcttgtggaaatattt |
17497954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 14824483 - 14824645
Alignment:
| Q |
84 |
cttgtgttcagtttattaagataagtttctgaagnnnnnnnnnttataattatgtgcaaaagttgannnnnnn-agtttatgagagaatcttatagttag |
182 |
Q |
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| T |
14824483 |
cttgtgttcagtttattaagataagtttctgaaggaaaa------aaaattatgtgcaaaagttgattttttttagtttataagagaatcttatagttag |
14824576 |
T |
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| Q |
183 |
aataatactcatgattattacaatatcatttcaactttttctttactacaagttcttgtggaaatattt |
251 |
Q |
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| T |
14824577 |
aataatactcatgattattacaatatcatttcaactttttctttactacaagttcttgtggaaatattt |
14824645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 15271490 - 15271652
Alignment:
| Q |
84 |
cttgtgttcagtttattaagataagtttctgaagnnnnnnnnnttataattatgtgcaaaagttgannnnnnn-agtttatgagagaatcttatagttag |
182 |
Q |
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| T |
15271490 |
cttgtgttcagtttattaagataagtttctgaaggaaaa------aaaattatgtgcaaaagttgattttttttagtttataagagaatcttatagttag |
15271583 |
T |
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| Q |
183 |
aataatactcatgattattacaatatcatttcaactttttctttactacaagttcttgtggaaatattt |
251 |
Q |
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| T |
15271584 |
aataatactcatgattattacaatatcatttcaactttttctttactacaagttcttgtggaaatattt |
15271652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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