View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18939_high_2 (Length: 619)
Name: NF18939_high_2
Description: NF18939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18939_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 21 - 508
Target Start/End: Complemental strand, 55907827 - 55907344
Alignment:
| Q |
21 |
agcgaaaggattactactattgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaa |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907827 |
agcgaaaggattactactactgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaa |
55907728 |
T |
|
| Q |
121 |
caaatgagagaagtcaaagttgtaatattaattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgata |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907727 |
caaatgagagaattcaaagttgtaatatt----ttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgata |
55907632 |
T |
|
| Q |
221 |
tttaatggaaaaggtatttggcagagaagcgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaacgttggtgaacctttggaatagacgag |
320 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |
|
|
| T |
55907631 |
tttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaagagacgag |
55907532 |
T |
|
| Q |
321 |
ggaggaaagtgcaagtttgatagaggatagttagagagaatcgaagagtgtaggtgactgagagaaactgtttggagacggttgagagagatttcaagta |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907531 |
ggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagta |
55907432 |
T |
|
| Q |
421 |
gcgaggattgtcattgatcagaaatgtgaagacatattcccaacaattatcagataaataacaattatttacagctgtcacagttgtg |
508 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907431 |
gcgaggattgtcgttgatcagaaatgtgaagacatattcccaacaattatcagataaataacaattatttacagctgtcacagttgtg |
55907344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 547 - 604
Target Start/End: Complemental strand, 55907302 - 55907245
Alignment:
| Q |
547 |
gaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttactttctgtg |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55907302 |
gaaagcaaccagtttactcaacctcattgttgttgttcttcttcttttactttctgtg |
55907245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 547943 - 548043
Alignment:
| Q |
45 |
gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaacaaatgagagaagtcaaagttgta |
144 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||||| |||||| |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
547943 |
gtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaacaagtgagagagttcaaagttgta |
548042 |
T |
|
| Q |
145 |
a |
145 |
Q |
| |
|
| |
|
|
| T |
548043 |
a |
548043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 152 - 326
Target Start/End: Original strand, 532773 - 532947
Alignment:
| Q |
152 |
ttttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagcg |
251 |
Q |
| |
|
|||| |||||| |||||||| ||| | ||||| ||| | ||||||| ||||||||||| || |||| || || |||||| |||||||||||||||| |
|
|
| T |
532773 |
tttttggagaaggctcgtaacccatttgcgggaatggtgtgttggttagagagattgagtgatgtgagtttgaagggaaaatatatttggcagagaagcc |
532872 |
T |
|
| Q |
252 |
cgttgaggtcaccgttgtaggaactaagatcaaggtaggtaacgttggtgaacctttggaatagacgagggagga |
326 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||| | ||||||||| || |||| || |||||||||| |
|
|
| T |
532873 |
tattgaggtcaccgttgtagcttgtaaggtcaagggaggtgaggttggtgaatctacggaagaggcgagggagga |
532947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 661854 - 661956
Alignment:
| Q |
113 |
tgttggaacaaatgagagaagtcaaagttgtaatattaattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcg |
212 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||| ||||||||||||||| || ||| ||||||| ||| | | |||||||||||||||||| | |
|
|
| T |
661854 |
tgttgtaacaaatgagagaggttaaagttgtaatata----ttgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtg |
661949 |
T |
|
| Q |
213 |
aagtgat |
219 |
Q |
| |
|
| ||||| |
|
|
| T |
661950 |
acgtgat |
661956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 3437748 - 3437647
Alignment:
| Q |
45 |
gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaacaaatgagagaagtcaaagttgta |
144 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| ||||||| || | || | | ||| || ||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
3437748 |
gtcaagtacttcaagtaaagggaagcaatcagagataagaattagatagcggtcatggagaaaatcaaagttggaacaactgagagaggtcaaagttgta |
3437649 |
T |
|
| Q |
145 |
at |
146 |
Q |
| |
|
|| |
|
|
| T |
3437648 |
at |
3437647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 170 - 508
Target Start/End: Complemental strand, 1036424 - 1036086
Alignment:
| Q |
170 |
aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagcgcgttgaggtcaccgttgt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036424 |
aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagcgcgttgaggtcaccgttgt |
1036325 |
T |
|
| Q |
270 |
aggaactaagatcaaggtaggtaacgttggtgaacctttggaatagacgagggaggaaagtgcaagtttgatagaggatagttagagagaatcgaagagt |
369 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036324 |
aggaactaagatcaaggtaggtaatgttggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggatagttagagagaatcgaagagt |
1036225 |
T |
|
| Q |
370 |
gtaggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcattgatcagaaatgtgaagacatattcccaacaatta |
469 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1036224 |
gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcattgatcagaaatgtgaagacatattccgaacaatta |
1036125 |
T |
|
| Q |
470 |
tcagataaataacaattatttacagctgtcacagttgtg |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036124 |
tcagataaataacaattatttacagctgtcacagttgtg |
1036086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 366
Target Start/End: Complemental strand, 1036763 - 1036422
Alignment:
| Q |
21 |
agcgaaaggattactactattgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
1036763 |
agcgaaaggattactactattgaagtcaagttcttcaaggaaaggaaagcaatcagaaataagaacaagatcattgttacatatagaagcaatgttggaa |
1036664 |
T |
|
| Q |
121 |
caaatgagagaagtcaaagttgtaatattaattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgata |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036663 |
caaatgagagaagtcaaagttgtaatatt----ttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgata |
1036568 |
T |
|
| Q |
221 |
tttaatggaaaaggtatttggcagagaagcgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaacgttggtgaacctttggaatagacgag |
320 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
1036567 |
tttaatggaaaaggtatttggtagagaagcgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgttggtgaacctttggaagagacgag |
1036468 |
T |
|
| Q |
321 |
ggaggaaagtgcaagtttgatagaggatagttagagagaatcgaag |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036467 |
ggaggaaagtgcaagtttgatagaggatagttagagagaatcgaag |
1036422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 547 - 604
Target Start/End: Complemental strand, 1036044 - 1035987
Alignment:
| Q |
547 |
gaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttactttctgtg |
604 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036044 |
gaaagcaaccagtttattcaacctcattgttgttcttcttcttcttttactttctgtg |
1035987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 44575222 - 44575173
Alignment:
| Q |
373 |
ggtgactgagagaaactgtttggagacggttgagagagatttcaagtagc |
422 |
Q |
| |
|
||||| ||||||||||||||| |||||| | |||||||| |||||||||| |
|
|
| T |
44575222 |
ggtgattgagagaaactgttttgagacgatggagagagacttcaagtagc |
44575173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 41900315 - 41900247
Alignment:
| Q |
353 |
agagagaatcgaagagtgtaggtgactgagagaaactgtttggagacggttgagagagatttcaagtag |
421 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41900315 |
agagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtag |
41900247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 6403858 - 6403901
Alignment:
| Q |
380 |
gagagaaactgtttggagacggttgagagagatttcaagtagcg |
423 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
6403858 |
gagaggaactgtttggatacggctgagagagatttcaagtagcg |
6403901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 513493 - 513428
Alignment:
| Q |
353 |
agagagaatcgaagagtgtaggtgactgagagaaactgtttggagacggttgagagagatttcaag |
418 |
Q |
| |
|
||||||||||| ||| ||| ||||| ||||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
513493 |
agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaag |
513428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University