View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18939_high_6 (Length: 273)
Name: NF18939_high_6
Description: NF18939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18939_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 39243179 - 39242937
Alignment:
| Q |
14 |
atcatgcattatgcaagctagctatctacaaggggtagcgaaataattgaccgttataaaagagtaggaatcacgcattaattttgaagatagagtaagt |
113 |
Q |
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| T |
39243179 |
atcatgcattatgcaagctagctatctacaaggggtagcgaaataattgaccgttataaaagagtaggaatcacgcattaattttgaagatagagtaagt |
39243080 |
T |
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| Q |
114 |
tcaattctcatatactaatacttatccttgttaacttatatatttgatgttaacttaaatgatgaattacaatgtaacttcaattgttaggttccttgga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39243079 |
tcaattctcatatactaatacttatccttgttaacttatatatttgatgttaacttaaatgatgaattacaatgtaacttcaattgttaggttccttgga |
39242980 |
T |
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| Q |
214 |
cagctgctttgtttggcggccccactttcttatagtggtattc |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39242979 |
cagctgctttgtttggcggccccactttcttatagtggtattc |
39242937 |
T |
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