View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18939_high_8 (Length: 256)
Name: NF18939_high_8
Description: NF18939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18939_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 53756395 - 53756171
Alignment:
| Q |
15 |
tatatccttccaagtgaattccctcaaatttttccctctcttttattttaacatttttcacactttaatacataccagtacacatcactcccttctcttc |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53756395 |
tatatccttccaaatgaattccctcaaatttttccctctcttttattttaacattttttacactttaatacataccagtacacatcactcccttctcttc |
53756296 |
T |
|
| Q |
115 |
ttccaccgcacctccctaatcatttctgacccctcccccacctcttttaaaagnnnnnnnnnnnnnnnnnncaattaaacattacaactatttagagtta |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
53756295 |
ttccaccgcacctccctaatcatttctgacccctcccccacctcttttaaaag--tctctttctctctctccaattaaacattacaactatttagagtaa |
53756198 |
T |
|
| Q |
215 |
gcattgccgcgtagagaggcaaaagat |
241 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
53756197 |
gcattgccgcgtagagaggcaaaagat |
53756171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University