View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18939_low_1 (Length: 744)

Name: NF18939_low_1
Description: NF18939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18939_low_1
NF18939_low_1
[»] chr7 (4 HSPs)
chr7 (18-382)||(7969180-7969544)
chr7 (90-333)||(37577632-37577873)
chr7 (197-266)||(32895222-32895287)
chr7 (17-58)||(37577562-37577603)
[»] chr5 (10 HSPs)
chr5 (92-333)||(32768424-32768662)
chr5 (92-318)||(32651175-32651398)
chr5 (18-178)||(25477767-25477924)
chr5 (133-333)||(25469920-25470117)
chr5 (91-178)||(32710668-32710755)
chr5 (92-178)||(32557359-32557445)
chr5 (163-266)||(32740594-32740694)
chr5 (111-190)||(32763443-32763522)
chr5 (18-58)||(32858862-32858902)
chr5 (254-332)||(28475450-28475529)
[»] chr1 (1 HSPs)
chr1 (91-169)||(17583916-17583994)
[»] chr4 (1 HSPs)
chr4 (282-333)||(2166106-2166159)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 7969544 - 7969180
Alignment:
Q  18 ttaagagttcagacacaatagtcaatgtgaaggagaagattttcgaaaagaataaagattaccaagtacacttgcaacgtctgatctttgccagtaagca 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7969544 ttaagagttcagacacaataggcaatgtgaaggagaagattttcgacaagaataaagattaccaagtacacgtgcaacgtctgatctttgccagtaagca 7969445  T
Q  118 attagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctcatcggagactagatgaccactgcacca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7969444 attagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctcatcggagactagatgaccactgcgcca 7969345  T
Q  218 tcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagag 317  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7969344 tcatcaccaattactaaatccaaaagcaggcaatcatccacctcatcatctgccactgtcggcaacccttgtcatgaagacaatctccctataagtagag 7969245  T
Q  318 aaataatacattattgttttttctgttttgtcttgagctgtataagatttatgttctattaagga 382  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7969244 aaataatacattactgttttttctgttttgtcttgagctgtataagatttatgttctattaagga 7969180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 90 - 333
Target Start/End: Original strand, 37577632 - 37577873
Alignment:
Q  90 tgcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcct 189  Q
    |||||||||||||||||||| ||||| || ||||| | ||||||||| ||||||||| | |||||||||||| |||||||||| |  |||||  |||| |    
T  37577632 tgcaacgtctgatctttgccggtaaggaactagataatagcctgacccttgccaattaccacatccaagagaagtcaaccctcaaattcgtcctccgcat 37577731  T
Q  190 catcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgt 289  Q
    ||| || || ||||||||| | |||| |||  | ||||||| || ||||||||||| |||| | ||||||||||  |||||||| || ||  ||||||||    
T  37577732 catgggggattagatgacctccgcacaatc--ccccgattaatacatccaagagcatgcaaccgtccacctcattgtctgccgccgttggtgacccttgt 37577829  T
Q  290 catgaagacaatctccctataagtagagaaataatacattattg 333  Q
    ||||||||||||| || ||||||| ||||| | |||||||||||    
T  37577830 catgaagacaatcaccatataagttgagaagtcatacattattg 37577873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 32895222 - 32895287
Alignment:
Q  197 gactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcat 266  Q
    |||||||||||||||||    |||||||| ||||||| |||||||||||||||| ||||||||| |||||    
T  32895222 gactagatgaccactgcg---tcatcacc-attactacatccaagagcaggcaaccatccaccttatcat 32895287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 37577562 - 37577603
Alignment:
Q  17 attaagagttcagacacaatagtcaatgtgaaggagaagatt 58  Q
    ||||||||||||||||| |||| | |||||||||||||||||    
T  37577562 attaagagttcagacacgatagccgatgtgaaggagaagatt 37577603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 92 - 333
Target Start/End: Original strand, 32768424 - 32768662
Alignment:
Q  92 caacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctca 191  Q
    |||||| |||| |||||| ||| ||||  |||||||| |  |||| |||||||||||||||||||||||| ||||| ||| ||| |||||| |||||| |    
T  32768424 caacgtttgatatttgccggtaggcaacgagatgacaacgagacccttgccaattgcaacatccaagagaagtcaatcctgcacgtcgtcatccgcctta 32768523  T
Q  192 tcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtca 291  Q
      || |||||||||| |||  ||| |||||| | |||||||   | ||||||||||||  | ||||||||||| | |||||| |||||  |||||| |||    
T  32768524 ctggggactagatgatcac--cac-atcatcgctgattactgttttcaagagcaggcagccgtccacctcatcgtttgccgccgtcggggacccttatca 32768620  T
Q  292 tgaagacaatctccctataagtagagaaataatacattattg 333  Q
    ||||||||| | ||||||||||||  || |||||||||||||    
T  32768621 tgaagacaaacaccctataagtagtaaagtaatacattattg 32768662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 92 - 318
Target Start/End: Complemental strand, 32651398 - 32651175
Alignment:
Q  92 caacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctca 191  Q
    |||||| ||||||||||  |||| ||| |||| ||| ||| || | ||||| ||| || ||||||||| | ||||||| | |||||| |   |||  |||    
T  32651398 caacgtttgatctttgctggtaaacaactagaggacggccggatccttgccgattacatcatccaagataagtcaaccattcacctcattctccgtgtca 32651299  T
Q  192 tcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtca 291  Q
    |||| |||||||||||||||||||||||    |||||||||| ||||||||| || ||| | ||||||||||||||||| ||  ||||||||| || |||    
T  32651298 tcggggactagatgaccactgcaccatcg---ccgattactatatccaagagaagtcaaccgtccacctcatcatctgctgccatcggcaaccgttatca 32651202  T
Q  292 tgaagacaatctccctataagtagaga 318  Q
     ||||||| || |||||||||||||||    
T  32651201 cgaagacagtcaccctataagtagaga 32651175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 25477767 - 25477924
Alignment:
Q  18 ttaagagttcagacacaatagtcaatgtgaaggagaagattttcgaaaagaataaagattaccaagtacacttgcaacgtctgatctttgccagtaagca 117  Q
    |||||||||||||||| |||| || |||||||||||||||||| || ||| | ||||  ||||||||  ||   ||||||||||| ||| || |||||||    
T  25477767 ttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaagga-aaag--taccaagtgaacgatcaacgtctgatattttccggtaagca 25477863  T
Q  118 attagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctc 178  Q
    | |||| ||| ||| |||||||||||||| |||||||||||||| ||||||| ||||||||    
T  25477864 actagacgactgccagaccattgccaattacaacatccaagagaagtcaaccatccacctc 25477924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 133 - 333
Target Start/End: Original strand, 25469920 - 25470117
Alignment:
Q  133 gaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctcatcggagactagatgaccactgcaccatcatcaccgattact 232  Q
    |||||||||||||||||||||| |||||| |||| || ||  |||||||   |||||||| || ||||||| ||| ||   ||||||      |||||||    
T  25469920 gaccattgccaattgcaacatcgaagagaagtcagccatcttcctcgtctttcgcctcatgggcgactagacgacaaccaaaccatcggt---gattact 25470016  T
Q  233 aaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataatacattatt 332  Q
    | |||||||||||||||| |||| ||||||||||| || ||  ||||| |||  | |||||||||||||| ||||||||||||| || ||||| ||||||    
T  25470017 acatccaagagcaggcaaccatcaacctcatcatccgctgccatcggcgacctgtatcatgaagacaatcaccctataagtagaaaattaatatattatt 25470116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 32710668 - 32710755
Alignment:
Q  91 gcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctc 178  Q
    |||| |||||||||||||||||||| || ||| |||| | | |||| ||||||||| |||||||||||||| |||||||||| |||||    
T  32710668 gcaatgtctgatctttgccagtaaggaactagctgactgtcagacccttgccaattacaacatccaagagaagtcaaccctcaacctc 32710755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 32557445 - 32557359
Alignment:
Q  92 caacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctc 178  Q
    ||||||||||| ||||||| ||||| | ||||||||||||  ||| ||||| ||| |||||||||||||| | ||||||||||||||    
T  32557445 caacgtctgatgtttgccaataagctactagatgacagccatacccttgcctattacaacatccaagagaaggcaaccctccacctc 32557359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 32740594 - 32740694
Alignment:
Q  163 gtcaaccctccacctcgtcagccgcctcatcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctca 262  Q
    |||||||||||||||||||  ||||||| | ||||||||||||||||   || || ||||||||||||||| |||||||||  ||||||  ||||||| |    
T  32740594 gtcaaccctccacctcgtcctccgcctccttggagactagatgacca---caacaccatcaccgattactacatccaagagttggcaattgtccacctta 32740690  T
Q  263 tcat 266  Q
    ||||    
T  32740691 tcat 32740694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 32763443 - 32763522
Alignment:
Q  111 gtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctc 190  Q
    ||||||| ||||| |||| ||| ||| ||||||||| ||||||||||||||  |||||| |||||||| ||| |||||||    
T  32763443 gtaagcagttagaggacaaccttacccttgccaattacaacatccaagagaattcaaccatccacctcctcatccgcctc 32763522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 32858862 - 32858902
Alignment:
Q  18 ttaagagttcagacacaatagtcaatgtgaaggagaagatt 58  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  32858862 ttaagagttcagacacgatagtcaatgtgaaggagatgatt 32858902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 28475450 - 28475529
Alignment:
Q  254 tccacctcatcatctgccgctgtcggcaacccttgtcatgaagacaat-ctccctataagtagagaaataatacattatt 332  Q
    ||||||||||| ||  |||||||||||||||||| || |||||||||| | ||||||| |||||||| | || |||||||    
T  28475450 tccacctcatcgtccaccgctgtcggcaacccttatcgtgaagacaatccaccctatatgtagagaagtcatgcattatt 28475529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 17583916 - 17583994
Alignment:
Q  91 gcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaacc 169  Q
    ||||||||||||||||| | |||||||| |||| |||| || |||| ||||| ||| |||||||||||||| |||||||    
T  17583916 gcaacgtctgatctttgacggtaagcaactagaggacaaccggacccttgccgattacaacatccaagagaagtcaacc 17583994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 2166159 - 2166106
Alignment:
Q  282 acccttgtcatgaagacaatctccctataagtagagaaata--atacattattg 333  Q
    |||||||||||||||||||||||| ||||| |||||| |||  |||||||||||    
T  2166159 acccttgtcatgaagacaatctccttataactagagagatatcatacattattg 2166106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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