View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18939_low_5 (Length: 287)
Name: NF18939_low_5
Description: NF18939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18939_low_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 29377026 - 29377312
Alignment:
| Q |
1 |
tatgtagcggtcgatgtcctatgtttcttatattaatggcgtccgccgtgctccataggttataattggatagaagctacaataaaaattatctaatggt |
100 |
Q |
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| T |
29377026 |
tatgtagcggtcgatgtcctatgtttcttatattaatggcgtcggccgtgctccataggttataattggatagaagctacaataaaaattatctaatggt |
29377125 |
T |
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| Q |
101 |
tgtgtagattgataaggttcatgtggtaacggaagctatcaattacgtaaaacaacttgaagaacgtgttaaagggctaggagaagatatcaaaaagaaa |
200 |
Q |
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| T |
29377126 |
tgtgtagattgataaggttcatgtggtaacggaagctatcaattacgtaaaacaacttgaagaacgtgttaaagggctaggagaagatatcaaaaagaaa |
29377225 |
T |
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| Q |
201 |
gagatagggtcagtgagcaccataacaagatctcatatcctaattgacaaagagactgcaatcggtgaaatgaaaactgaagaatgt |
287 |
Q |
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| T |
29377226 |
gacacagggtcagtgagcaccataacaagatcccatatcttaattgacaaagacactgcaatagatgaaatgaaaactgaagaatgt |
29377312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 59 - 287
Target Start/End: Original strand, 45039329 - 45039559
Alignment:
| Q |
59 |
gttataattggatagaagctacaa--taaaaattatctaatggttgtgtagattgataaggttcatgtggtaacggaagctatcaattacgtaaaacaac |
156 |
Q |
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| T |
45039329 |
gttatcattggatagaagctacaaactaaaaactatctaatgtctgtgtagattgataaggttcatgtggtaacggaagctatcaattacatgaaacaac |
45039428 |
T |
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| Q |
157 |
ttgaagaacgtgttaaagggctaggagaagatatcaaaaagaaagagatagggtcagtgagcaccataacaagatctcatatcctaattgacaaagagac |
256 |
Q |
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| T |
45039429 |
ttgaagaacgtttgaaagagctagaagaagacattaagaagaaagatgcaggatcattgagcaccataacaagatctcgtgttttaattgacaaagacat |
45039528 |
T |
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| Q |
257 |
tgcaatcggtgaaatgaaaactgaagaatgt |
287 |
Q |
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| T |
45039529 |
tgcaatcggtgaaatgaacactgaagaatgt |
45039559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 287
Target Start/End: Complemental strand, 45083259 - 45083031
Alignment:
| Q |
59 |
gttataattggatagaagctacaataaaaattatctaatggttgtgtagattgataaggttcatgtggtaacggaagctatcaattacgtaaaacaactt |
158 |
Q |
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| T |
45083259 |
gttatcattggatagaagctataaaaagacttatctaatggctgtgtagacggacaaggttcatgtactaggagaagctgtcaagtacgtggcacaactt |
45083160 |
T |
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| Q |
159 |
gaagaacgtgttaaagggctaggagaagatatcaaaaagaaagagatagggtcagtgagcaccataacaagatctcatatcctaattgacaaagagactg |
258 |
Q |
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| T |
45083159 |
caagaacgtgtgaaagagctagaagaagacatcaagaagaaaggtgcgggatcattgatcaccataacaagatctcatctccttgatgacaatgacactg |
45083060 |
T |
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| Q |
259 |
caatcggtgaaatgaaaactgaagaatgt |
287 |
Q |
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| T |
45083059 |
caatgggtgaaatgaacactaaagaatgt |
45083031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 45064965 - 45065054
Alignment:
| Q |
59 |
gttataattggatagaagcta--caataaaaattatctaatggttgtgtagattgataaggttcatgtggtaacggaagctatcaattac |
146 |
Q |
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| T |
45064965 |
gttatcattggatagatgctatacaataaaaattatctaaaggctatgtagattgatacggttcatgtggtaacggaagctatcaattac |
45065054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 287
Target Start/End: Original strand, 45065334 - 45065471
Alignment:
| Q |
150 |
aaacaacttgaagaacgtgttaaagggctaggagaagatatcaaaaagaaagagatagggtcagtgagcaccataacaagatctcatatcctaattgaca |
249 |
Q |
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| T |
45065334 |
aaacaacttgaagagcgtttgaaagagcttgaagaaaacattaagaagaaagatgcaggatcaatgagcaacataacaagatcccatgtactaattgaca |
45065433 |
T |
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| Q |
250 |
aagagactgcaatcggtgaaatgaaaactgaagaatgt |
287 |
Q |
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| T |
45065434 |
aagacactacgataggtgaaatgaacactgaagaatgt |
45065471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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