View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18939_low_7 (Length: 271)
Name: NF18939_low_7
Description: NF18939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18939_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 126 - 257
Target Start/End: Original strand, 10343388 - 10343519
Alignment:
| Q |
126 |
tagtactacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccatga |
225 |
Q |
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| T |
10343388 |
tagtactatttggtcctgcgcctacatcaacaacttcatttattatgcgttggttcaacatagttgaaataacattattaccactattgttacaccatga |
10343487 |
T |
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| Q |
226 |
tgttgatgaaatcaaaaaagatatgttgttga |
257 |
Q |
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| T |
10343488 |
tgttgatgaaatcaaaaaagacatgttgttga |
10343519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 10343225 - 10343341
Alignment:
| Q |
17 |
acaatagtcgtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcaaatgcaggaccaaataatactgcaacttagtc |
116 |
Q |
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| T |
10343225 |
acaatagtggtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcatgtgcaagaccaagtagcactgcgactcagtc |
10343324 |
T |
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| Q |
117 |
tcaaatgaatagtacta |
133 |
Q |
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| T |
10343325 |
tcaaatgaatagtacta |
10343341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 10181507 - 10181636
Alignment:
| Q |
124 |
aatagtactacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccat |
223 |
Q |
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| T |
10181507 |
aatagtactacttggacctgcacctacagcaacaacttcattcatcatgtgttggtttaacatagttgaaatgacgctattaccgatatagtacctccat |
10181606 |
T |
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| Q |
224 |
gatgttgatgaaatcaaaaaagatatgttg |
253 |
Q |
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| T |
10181607 |
gaagttgatgaaactaaagaagacatgttg |
10181636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 10343309 - 10343203
Alignment:
| Q |
131 |
ctacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccatgatgttg |
230 |
Q |
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| T |
10343309 |
ctacttggtcttgcacatgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgacactgttaccactattgttccatcattatgtta |
10343210 |
T |
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| Q |
231 |
atgaaat |
237 |
Q |
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| T |
10343209 |
atgaaat |
10343203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 10181581 - 10181533
Alignment:
| Q |
34 |
gtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctg |
82 |
Q |
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| T |
10181581 |
gtcatttcaactatgttaaaccaacacatgatgaatgaagttgttgctg |
10181533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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