View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18939_low_9 (Length: 250)
Name: NF18939_low_9
Description: NF18939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18939_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 48718395 - 48718160
Alignment:
| Q |
1 |
aaacacggacatatcaacaaacaccagacacatgcaggtgataatttgatagatggcataattatatgtgtacgtcgtatcagacaccagacacatattc |
100 |
Q |
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| T |
48718395 |
aaacacggacatatcaacaaacaccagacacatgcaggtgataatttgatagatggcataattatatgtgtacgtagtatcagacaccagacacatattc |
48718296 |
T |
|
| Q |
101 |
gatagatcagagtttaaaagttaacatacccgggaaccataggataattggacatgccaagatcatttttgatttggtgaagatcagaatggcagactcc |
200 |
Q |
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| T |
48718295 |
gatagatcagagtttaaaagttaacatacccgggaaccataggataattggacatgccaagatcatttttgatttggtgaagatcagaatggcagactcc |
48718196 |
T |
|
| Q |
201 |
acagtaatgaattttgatgtaaacatcatccggtcc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
48718195 |
acagtaatgaattttgatgtaaacatcatccggtcc |
48718160 |
T |
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