View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1893_high_13 (Length: 221)
Name: NF1893_high_13
Description: NF1893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1893_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 1624878 - 1625043
Alignment:
| Q |
40 |
taaaatcatttttaatacccttgttatgtttcagaaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaaat |
139 |
Q |
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| T |
1624878 |
taaaatcattgttaatacctttgttatgtttcagaaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaatt |
1624977 |
T |
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| Q |
140 |
gaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
205 |
Q |
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| T |
1624978 |
gaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
1625043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 206
Target Start/End: Original strand, 1607871 - 1608037
Alignment:
| Q |
40 |
taaaatcatttttaatacccttgttatgtttcagaaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaaat |
139 |
Q |
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| T |
1607871 |
taaaatcattgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgttccttatcatttcagtgacattggtttgcataatgaaatc |
1607970 |
T |
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| Q |
140 |
gaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgtt |
206 |
Q |
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| T |
1607971 |
gaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgtt |
1608037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 206
Target Start/End: Original strand, 1631361 - 1631527
Alignment:
| Q |
40 |
taaaatcatttttaatacccttgttatgtttcagaaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaaat |
139 |
Q |
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| T |
1631361 |
taaaatcattgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgttccttatcatttcagtgacattggtttgcataatgaaatc |
1631460 |
T |
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| Q |
140 |
gaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgtt |
206 |
Q |
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| T |
1631461 |
gaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgtt |
1631527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 10819181 - 10819016
Alignment:
| Q |
40 |
taaaatcatttttaatacccttgttatgtttcagaaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaaat |
139 |
Q |
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| T |
10819181 |
taaaatcattgttagtacctgttttatgattcaggaaatgcatattgatggctaagatgttccttatcatctcagtgacattggcttgcataatgaaatt |
10819082 |
T |
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| Q |
140 |
gaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
205 |
Q |
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| T |
10819081 |
gaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
10819016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 18785834 - 18785984
Alignment:
| Q |
55 |
tacccttgttatgtttcagaaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaaatgaaatcttgagcatt |
154 |
Q |
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|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18785834 |
tacctttgttatgttttaggaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaattgaaatcttgagcatt |
18785933 |
T |
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| Q |
155 |
gagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
205 |
Q |
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| T |
18785934 |
gagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
18785984 |
T |
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