View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1893_low_17 (Length: 233)
Name: NF1893_low_17
Description: NF1893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1893_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 37012885 - 37012982
Alignment:
| Q |
25 |
ttaattgttaaattaaagactagacgacttgaaattttgagtttcaaagaaaaattaatttattaagtttaattgtttaaagtcactttgaatgtgtg |
122 |
Q |
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| T |
37012885 |
ttaattgttaaattaaagactagacgacttgaaattttgagtttcaaagaaaaattaatttattaagtttaattgtttaaagtcactttgaatgtgtg |
37012982 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 37013033 - 37013089
Alignment:
| Q |
137 |
ataagattaatttcatttgttaagatttgagaatagaagtttgaaatcacttatcaa |
193 |
Q |
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| T |
37013033 |
ataagattactttcatttgttaagatttgagaacagaagtttgaaattacttatcaa |
37013089 |
T |
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