View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1893_low_19 (Length: 212)

Name: NF1893_low_19
Description: NF1893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1893_low_19
NF1893_low_19
[»] chr1 (6 HSPs)
chr1 (24-191)||(9825619-9825786)
chr1 (19-176)||(41862981-41863137)
chr1 (70-166)||(23480907-23481003)
chr1 (70-166)||(5429391-5429487)
chr1 (60-128)||(38685478-38685546)
chr1 (138-166)||(52206089-52206117)
[»] chr4 (6 HSPs)
chr4 (19-195)||(49200158-49200334)
chr4 (70-128)||(2479322-2479380)
chr4 (70-167)||(47965924-47966021)
chr4 (70-181)||(33315633-33315744)
chr4 (60-176)||(47428017-47428133)
chr4 (60-128)||(29968295-29968363)
[»] scaffold0192 (1 HSPs)
scaffold0192 (70-180)||(19346-19457)
[»] chr3 (4 HSPs)
chr3 (70-180)||(15993239-15993349)
chr3 (60-166)||(17757732-17757838)
chr3 (60-166)||(19059052-19059158)
chr3 (70-128)||(2702205-2702263)
[»] chr6 (3 HSPs)
chr6 (73-174)||(7018426-7018527)
chr6 (71-129)||(15298163-15298221)
chr6 (70-176)||(1394100-1394206)
[»] chr5 (6 HSPs)
chr5 (70-181)||(11298693-11298804)
chr5 (71-181)||(37340088-37340195)
chr5 (70-176)||(31486230-31486336)
chr5 (70-176)||(19123242-19123348)
chr5 (73-176)||(14164448-14164551)
chr5 (60-121)||(31487300-31487361)
[»] chr7 (3 HSPs)
chr7 (61-166)||(16375689-16375794)
chr7 (60-128)||(45286492-45286560)
chr7 (76-128)||(48639488-48639540)
[»] chr2 (2 HSPs)
chr2 (70-142)||(24322880-24322955)
chr2 (53-166)||(41582446-41582559)
[»] chr8 (7 HSPs)
chr8 (70-166)||(43418444-43418540)
chr8 (60-166)||(1852254-1852360)
chr8 (70-128)||(1199589-1199647)
chr8 (60-166)||(44429606-44429711)
chr8 (70-166)||(604117-604213)
chr8 (62-166)||(1851110-1851214)
chr8 (70-166)||(44434373-44434468)
[»] scaffold1155 (1 HSPs)
scaffold1155 (70-128)||(771-829)
[»] scaffold0345 (1 HSPs)
scaffold0345 (70-128)||(9388-9446)
[»] scaffold0105 (1 HSPs)
scaffold0105 (70-128)||(29534-29592)
[»] scaffold0059 (1 HSPs)
scaffold0059 (70-128)||(71289-71347)
[»] scaffold0013 (1 HSPs)
scaffold0013 (70-128)||(104718-104776)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 9825619 - 9825786
Alignment:
Q  24 tcccagcgcctgtattttcgtatagacaactatacattgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaa 123  Q
    ||||| || |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9825619 tcccaacgactgtattttcgtatggacaactatatgttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaa 9825718  T
Q  124 agatatagatgagacgtctaacatcgtgtatgaagaagtattttaaaatgtgtaatatcgcctattat 191  Q
    |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| | | ||||||||    
T  9825719 agatatggatgagacgtctaacgtcgtgtatgaagaagtatttcaaaatgtgtaacaccccctattat 9825786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 41863137 - 41862981
Alignment:
Q  19 atatctcccagcgcctgtattttcgtatagacaactatacattgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagat 118  Q
    |||||||||| |  ||||||||||  || ||||| ||||  ||||||| | ||||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  41863137 atatctcccaacatctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaagactgaaaatattga-taataatgaagat 41863039  T
Q  119 ggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaaaatgtgt 176  Q
    ||| ||||||| |||  |||||||||   ||| || ||||||||||||| ||||||||    
T  41863038 ggtgaagatattgatacgacgtctaatgccgtatacgaagaagtattttgaaatgtgt 41862981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 23481003 - 23480907
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattt 166  Q
    ||||||||||||||||||| |||| ||||||||||| | | ||||||||||| ||||||   ||| |||||||| | |||| ||||| |||||||||    
T  23481003 aagagttacatccagagaaggactaaagatattgatcactgatgaagatggtgaagataccaatgtgacgtctagcgtcgtatatgaggaagtattt 23480907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 5429391 - 5429487
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattt 166  Q
    ||||||||||||||||||| |||| ||||||||||| | | ||||||||||| |||||| | |||  || | ||| ||||| ||||| |||||||||    
T  5429391 aagagttacatccagagaaggactaaagatattgatcactgatgaagatggtgaagatacaaatgtaacatttaatatcgtatatgaggaagtattt 5429487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 38685478 - 38685546
Alignment:
Q  60 ttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    ||||||| ||||||||||||||||||||| |||| || |||||||| | | ||||||||||| ||||||    
T  38685478 ttgttgtttaaagagttacatccagagaaggactaaaaatattgatcactgatgaagatggtgaagata 38685546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 52206089 - 52206117
Alignment:
Q  138 cgtctaacatcgtgtatgaagaagtattt 166  Q
    |||||||||||||||||||||||||||||    
T  52206089 cgtctaacatcgtgtatgaagaagtattt 52206117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 49200334 - 49200158
Alignment:
Q  19 atatctcccagcgcctgtattttcgtatagacaactatacattgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagat 118  Q
    |||||||||| ||| |||||||||| |  |||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  49200334 atatctcccaacgcatgtattttcgcacggacaactatacaatgttgtataaagagttgcatccagagaaggactgaagatattgattaataatgaagat 49200235  T
Q  119 ggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaaaatgtgtaatatcgcctattatgtat 195  Q
     || ||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  49200234 tgtgaagatatggatgagacgtctaacgtcgtgtatgaagaagtatttcaaaatgtgtaataccccctattatgtat 49200158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 2479380 - 2479322
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||||    
T  2479380 aagagttacatccagagaatgactaaagatattgattactgatgaagatggtgaagata 2479322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 47966021 - 47965924
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtatttt 167  Q
    |||||||||||| ||||||  ||| ||||||||||| | ||||||||||||| ||||||| |||| ||| ||||| |||||||| ||| || ||||||    
T  47966021 aagagttacatctagagaagaactaaagatattgataactaatgaagatggtgaagatattgatgtgacatctaatatcgtgtacgaaaaaatatttt 47965924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 33315633 - 33315744
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaa 169  Q
    ||||||||||||||||||| |   |||||||||||| | |||||||||| || ||||| | |||| |||||||||  ||||||| |||||| |||||  |    
T  33315633 aagagttacatccagagaagggtcgaagatattgataattaatgaagattgtgaagatgttgatgtgacgtctaatgtcgtgtacgaagaaatatttcga 33315732  T
Q  170 aatgtgtaatat 181  Q
    ||||| ||||||    
T  33315733 aatgtataatat 33315744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 47428133 - 47428017
Alignment:
Q  60 ttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaaga 159  Q
    ||||||| | |||||||||||||| |||| ||||  |||||||||| | | ||||||||||| ||||||   |||  || |||||| |||| |||||  |    
T  47428133 ttgttgtttcaagagttacatccaaagaaggactatagatattgatcactgatgaagatggtgaagatactaatgtaacatctaacgtcgtatatgagaa 47428034  T
Q  160 agtattttaaaatgtgt 176  Q
    ||||||||| |||||||    
T  47428033 agtattttacaatgtgt 47428017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 29968295 - 29968363
Alignment:
Q  60 ttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    ||||||| | |||||||||||||| |||| |||| || |||||||| | | ||||||||||| ||||||    
T  29968295 ttgttgtttcaagagttacatccaaagaaggactaaaaatattgatcactgatgaagatggtgaagata 29968363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 19457 - 19346
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattt-ta 168  Q
    |||| ||||||||||||||  |||||| |||||||| ||||||||||||||| ||||| | |||| ||| |||||| ||||||| ||||||||||||  |    
T  19457 aagaattacatccagagaaatactgaaaatattgataaataatgaagatggtgaagatgttgatgcgacttctaacgtcgtgtacgaagaagtatttcaa 19358  T
Q  169 aaatgtgtaata 180  Q
    ||||||||||||    
T  19357 aaatgtgtaata 19346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 15993349 - 15993239
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaa 169  Q
    |||| |||||||||||||| ||||||| |||||||| ||||||||| ||||| ||||||| |||| ||| |||||| | |||||  |||||||||||  |    
T  15993349 aagaattacatccagagaaggactgaaaatattgataaataatgaacatggtgaagatattgatgcgacttctaacgttgtgtacaaagaagtatttcga 15993250  T
Q  170 aatgtgtaata 180  Q
    |||||||||||    
T  15993249 aatgtgtaata 15993239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 17757732 - 17757838
Alignment:
Q  60 ttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaaga 159  Q
    ||||||| | |||||||||||| |||||| |||||||||| ||||| | | ||||||||||| ||||||   ||| ||||||||||||||| || || ||    
T  17757732 ttgttgtttcaagagttacatctagagaaggactgaagatgttgatcactgatgaagatggtgaagataccaatgtgacgtctaacatcgtatacgagga 17757831  T
Q  160 agtattt 166  Q
    |||||||    
T  17757832 agtattt 17757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 19059052 - 19059158
Alignment:
Q  60 ttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaaga 159  Q
    ||||||| | |||||||||||| |||||| |||||||||| ||||| | | ||||||||||| ||||||   ||| ||||||||||||||| || || ||    
T  19059052 ttgttgtttcaagagttacatctagagaaggactgaagatgttgatcactgatgaagatggtgaagataccaatgtgacgtctaacatcgtatacgagga 19059151  T
Q  160 agtattt 166  Q
    |||||||    
T  19059152 agtattt 19059158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 2702205 - 2702263
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    |||||||||||| |||||| |||| ||||||||||||  ||||||||||||| ||||||    
T  2702205 aagagttacatctagagaaggactaaagatattgattgctaatgaagatggtcaagata 2702263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 7018426 - 7018527
Alignment:
Q  73 agttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaaaat 172  Q
    ||||||||||||||||||  |||||||| |||| | | ||||||||||| ||||||  ||||||||||||||||| || || |||||||||||| |||||    
T  7018426 agttacatccagagaatggttgaagatactgataattgatgaagatggtgaagatacggatgagacgtctaacatagtatacgaagaagtatttcaaaat 7018525  T
Q  173 gt 174  Q
    ||    
T  7018526 gt 7018527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 15298163 - 15298221
Alignment:
Q  71 agagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatat 129  Q
    ||||||||||| |||||| ||||||| |||||||||| | ||||||||||| |||||||    
T  15298163 agagttacatctagagaaggactgaatatattgattacttatgaagatggtgaagatat 15298221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 1394100 - 1394206
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaa 169  Q
    |||||||||||| |||||| |||| || |||||||| | | ||||||||||| ||||||   |||  ||||||||  || | ||||||||||||||| |     
T  1394100 aagagttacatctagagaaggactaaatatattgatcactgatgaagatggtgaagataccaatgtaacgtctaatgtcatatatgaagaagtatttcac 1394199  T
Q  170 aatgtgt 176  Q
    |||||||    
T  1394200 aatgtgt 1394206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 11298804 - 11298693
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaa 169  Q
    |||||||||||| |||||| |||| ||||||||||| | ||||||||| ||| ||||||| |||| ||| | |||  |||||||  |||||||||||| |    
T  11298804 aagagttacatctagagaaggactaaagatattgataactaatgaagacggtgaagatattgatgtgacatataatgtcgtgtacaaagaagtattttga 11298705  T
Q  170 aatgtgtaatat 181  Q
    ||||||||||||    
T  11298704 aatgtgtaatat 11298693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 37340088 - 37340195
Alignment:
Q  71 agagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaaa 170  Q
    ||||||||||| |||||| |||||||||||||||| | | |||||||||   ||||||| |||| ||| |||||  |||||||| |||||||||||  ||    
T  37340088 agagttacatctagagaaggactgaagatattgataacttatgaagatg---aagatattgatgtgacatctaatgtcgtgtataaagaagtatttcgaa 37340184  T
Q  171 atgtgtaatat 181  Q
    |||||||||||    
T  37340185 atgtgtaatat 37340195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 31486336 - 31486230
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaa 169  Q
    ||||||||||||||||||| |||| ||||||||||| | | ||||||||||| ||||||   |||  | ||||||| |||| ||||| ||||||||||      
T  31486336 aagagttacatccagagaaggactaaagatattgatcactgatgaagatggtgaagataccaatgtaatgtctaacgtcgtatatgaggaagtattttgc 31486237  T
Q  170 aatgtgt 176  Q
    |||||||    
T  31486236 aatgtgt 31486230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 19123242 - 19123348
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaa 169  Q
    |||||||| |||||||||| |||| ||||||||||| | | ||||||||||| ||||||   |||  ||||||||  |||| ||||| ||||||||| |     
T  19123242 aagagttatatccagagaaggactaaagatattgatcattgatgaagatggtgaagataccaatgtaacgtctaatgtcgtatatgaggaagtatttcac 19123341  T
Q  170 aatgtgt 176  Q
    |||||||    
T  19123342 aatgtgt 19123348  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 14164551 - 14164448
Alignment:
Q  73 agttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattttaaaat 172  Q
    |||||||||||||||| |||| |||||||||||   | ||||||||||| ||||||   |||  ||||||||  |||| ||||| ||||||||||  |||    
T  14164551 agttacatccagagaaggactaaagatattgatcgctgatgaagatggtgaagataccaatgtaacgtctaatgtcgtatatgaggaagtattttgcaat 14164452  T
Q  173 gtgt 176  Q
    ||||    
T  14164451 gtgt 14164448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 31487361 - 31487300
Alignment:
Q  60 ttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggt 121  Q
    ||||||| | |||||||||||||| |||| |||| ||||||||||| | | |||||||||||    
T  31487361 ttgttgtttcaagagttacatccaaagaaggactaaagatattgatcactgatgaagatggt 31487300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 16375794 - 16375689
Alignment:
Q  61 tgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaa 160  Q
    |||||| | ||||||||||||||||||| |||| ||||||||||| | | ||||||||||| ||||||   ||| |||||||||| |||| ||||| | |    
T  16375794 tgttgtttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatggtgaagataccaatgtgacgtctaacgtcgtatatgatgta 16375695  T
Q  161 gtattt 166  Q
    ||||||    
T  16375694 gtattt 16375689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 45286492 - 45286560
Alignment:
Q  60 ttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    ||||||| | ||||||||||||||||||| |||| ||||||||||| | | ||||||||| | ||||||    
T  45286492 ttgttgtttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatgatgaagata 45286560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 48639540 - 48639488
Alignment:
Q  76 tacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    |||||||||||||||||| ||||||||||  | | ||||||||||| ||||||    
T  48639540 tacatccagagaatgactaaagatattgaacattgatgaagatggtgaagata 48639488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 24322955 - 24322880
Alignment:
Q  70 aagagttacatccagagaatgactgaagatat---tgattaataatgaagatggtaaagatatagatgagacgtct 142  Q
    ||||||||||||||||||||||||||| ||||   |||| ||||||||||||||| ||||||| |||| |||||||    
T  24322955 aagagttacatccagagaatgactgaaaatattggtgataaataatgaagatggtgaagatattgatgtgacgtct 24322880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 41582446 - 41582559
Alignment:
Q  53 ctatacattgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgt 152  Q
    |||||| |||||||||  ||||||||||| |||||| || |||| |||||||| |||||  |||||||  ||||||| |||| ||| |||||||||||||    
T  41582446 ctatacgttgttgtatctagagttacatctagagaaggattgaaaatattgataaataacaaagatggagaagatattgatgtgacatctaacatcgtgt 41582545  T
Q  153 atgaagaagtattt 166  Q
      ||| ||||||||    
T  41582546 gcgaataagtattt 41582559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 43418540 - 43418444
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattt 166  Q
    ||||||||| ||||||||| || |||| ||| |||| |||||||||||||  |||||||| ||||   |||||||| ||||||| ||||||||||||    
T  43418540 aagagttacctccagagaaggattgaaaatactgataaataatgaagatgacaaagatattgatgcaccgtctaacgtcgtgtacgaagaagtattt 43418444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 1852254 - 1852360
Alignment:
Q  60 ttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaaga 159  Q
    ||||||| | |||||||||||| |||||| |||| ||||||||||  | ||||||||||||| ||||||   ||| ||| |||||| |||| ||||| ||    
T  1852254 ttgttgtttcaagagttacatcaagagaaggactaaagatattgaacactaatgaagatggtgaagataccaatgtgacatctaacgtcgtatatgagga 1852353  T
Q  160 agtattt 166  Q
    |||||||    
T  1852354 agtattt 1852360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 1199589 - 1199647
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    |||||||||||||||||||  ||| ||||||||||| | | ||||||||||| ||||||    
T  1199589 aagagttacatccagagaagtactaaagatattgatcactgatgaagatggtgaagata 1199647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 44429606 - 44429711
Alignment:
Q  60 ttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaaga 159  Q
    ||||||| | |||||||||||||| | || |||| ||||||||||| | | || |||||||| ||||||   |||  ||||||||  |||||||||||||    
T  44429606 ttgttgtttcaagagttacatccaaaaaa-gactaaagatattgatcattgataaagatggtgaagataccaatgtaacgtctaatgtcgtgtatgaaga 44429704  T
Q  160 agtattt 166  Q
    |||||||    
T  44429705 agtattt 44429711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 604213 - 604117
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattt 166  Q
    |||||||||||||| |||| || | ||||||||||| | | ||||||||||| ||||||   |||  || |||||| |||| ||||| |||||||||    
T  604213 aagagttacatccaaagaaggattaaagatattgatcactgatgaagatggtgaagataccaatgtaacatctaacgtcgtatatgaggaagtattt 604117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 1851110 - 1851214
Alignment:
Q  62 gttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaag 161  Q
    ||||||| |||||||||||| ||||||  ||| |||||||||||   | ||||||||||| ||||||   ||| ||| ||||||  ||| ||||| ||||    
T  1851110 gttgtatcaagagttacatcaagagaagaactaaagatattgatatctgatgaagatggtgaagataccaatgtgacatctaacgccgtatatgaggaag 1851209  T
Q  162 tattt 166  Q
    |||||    
T  1851210 tattt 1851214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 44434373 - 44434468
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagatatagatgagacgtctaacatcgtgtatgaagaagtattt 166  Q
    |||||||||||||| |||| || | ||||||||||| | | ||||||||| | |||||||  |||  || |||||| |||| |||||||||||||||    
T  44434373 aagagttacatccaaagaagga-taaagatattgatcactgatgaagatgatgaagatatcaatgtaacatctaacgtcgtatatgaagaagtattt 44434468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 829 - 771
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    ||||||||||||| |||||||||| ||||||||||| | | ||||||||||| ||||||    
T  829 aagagttacatccggagaatgactaaagatattgatcactgatgaagatggtgaagata 771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 9388 - 9446
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    ||||||||||||| |||||||||| ||||||||||| | | ||||||||||| ||||||    
T  9388 aagagttacatccggagaatgactaaagatattgatcactgatgaagatggtgaagata 9446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 29592 - 29534
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    ||||||||||||| |||||||||| ||||||||||| | | ||||||||||| ||||||    
T  29592 aagagttacatccggagaatgactaaagatattgatcactgatgaagatggtgaagata 29534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 71347 - 71289
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    |||||| |||||||||||| |||| ||||||||||| | | ||||||||||| ||||||    
T  71347 aagagtaacatccagagaaagactaaagatattgatcactgatgaagatggtgaagata 71289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 104718 - 104776
Alignment:
Q  70 aagagttacatccagagaatgactgaagatattgattaataatgaagatggtaaagata 128  Q
    |||||| |||||||||||| |||| ||||||||||| | | ||||||||||| ||||||    
T  104718 aagagtaacatccagagaaggactaaagatattgatcactgatgaagatggtgaagata 104776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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