View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1893_low_2 (Length: 566)
Name: NF1893_low_2
Description: NF1893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1893_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 37998932 - 37999488
Alignment:
| Q |
1 |
agtcatgtatataaattttgctagacggattaaaaagcacatgcttgatcaattggaaagnnnnnnngtgaacaggaaacaagcacatgcaccacaaggt |
100 |
Q |
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| T |
37998932 |
agtcatgtatataatttttgctagccggattaaaaagcacatgcttgatcaattggaaagaaaaaaagtgaacaggaaacaagcacatgcaccacaaggt |
37999031 |
T |
|
| Q |
101 |
cacaaacattcttaaaagaggaaaaaatatgtgtagcaagaaaactaggaggtgatgaatcattaaagattctcctctttaatacaaatttaaggaataa |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37999032 |
cacaaacattcttaaa-gaggaaaaaatatgtgtagcaacaaaactaggaggtgatgaatcattgaagattctcctctttaatacaaatttaaggaataa |
37999130 |
T |
|
| Q |
201 |
tacagtctcactgctatccctagtcagatgcaaaatcaaggtaacactagaagtagataactatgaagcacaaacaccttttaatatcaggcctgtcgca |
300 |
Q |
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| T |
37999131 |
tacagtctcactgctatccctagtcagatgcaaaatcaaggtaacactagaagtagataactatgaagcacaaacaccttttaatatcaggcctgtcgca |
37999230 |
T |
|
| Q |
301 |
tatcagacactcatgtgacacttgttctacacgtgttggaaaactcgtgcagaaagtgtcccaaaatattttgttgtcggagcaatgttaaacacaatta |
400 |
Q |
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| T |
37999231 |
tatcagacactcatgtgacacttgttctacacgtgttggaaaactcgtgcagaaagtgtcccaaaatattttgttgtcggagcaatgttaaacataatta |
37999330 |
T |
|
| Q |
401 |
ttaggactaaaaatatgtgggagcaatgttaatgaatgaggggtcaagtcaaagacattgaatttgattacaacataaaaggtcaaatactatcttatct |
500 |
Q |
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| T |
37999331 |
ttaggactaaaaatatgtgggagcaatgttaatgaatgaggggtcaagtcaaagacattgaatttgattacaacataaaaggtcaaatactatcttatct |
37999430 |
T |
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| Q |
501 |
tgttttagaa-ttttttctaaatcaaataaattgcttaatttggatcaggtgtctgtg |
557 |
Q |
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| T |
37999431 |
tgttttagaatttttttctaaatcaaataaattgcttaatttggatcaggtgtctgtg |
37999488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 541
Target Start/End: Original strand, 44650046 - 44650109
Alignment:
| Q |
478 |
aaaggtcaaatactatcttatcttgttttagaattttttctaaatcaaataaattgcttaattt |
541 |
Q |
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| T |
44650046 |
aaaggtcaaattctatggtatcttgttttataattttttttcaatgaaataaattgctcaattt |
44650109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 535
Target Start/End: Original strand, 4748159 - 4748215
Alignment:
| Q |
478 |
aaaggtcaaatactatcttatcttgttttagaattttttctaaatcaaataaattgct |
535 |
Q |
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| T |
4748159 |
aaaggtcaaatactatcgtaacttgttttagaactttttc-caatgaaataaattgct |
4748215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 535
Target Start/End: Complemental strand, 9929714 - 9929658
Alignment:
| Q |
478 |
aaaggtcaaatactatcttatcttgttttagaattttttctaaatcaaataaattgct |
535 |
Q |
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| T |
9929714 |
aaaggtcaaatactatgatatcttgttgtagaactttttct-aatgaaataaattgct |
9929658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 535
Target Start/End: Original strand, 16661256 - 16661312
Alignment:
| Q |
478 |
aaaggtcaaatactatcttatcttgttttagaattttttctaaatcaaataaattgct |
535 |
Q |
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|||||| |||||||||| ||||||||||||||| ||||| | ||| |||||||||||| |
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| T |
16661256 |
aaaggttaaatactatcctatcttgttttagaacttttt-ttaataaaataaattgct |
16661312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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