View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1893_low_5 (Length: 432)
Name: NF1893_low_5
Description: NF1893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1893_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Complemental strand, 36734075 - 36733674
Alignment:
| Q |
20 |
aaaagctctcttccaacatcaataacctcattctccttccctttcttgagcaaaaaactaacaaaccttgttgtctcttgtctccttaaaggaagaagtt |
119 |
Q |
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| T |
36734075 |
aaaagctctcttccaacatcaataacctcattctccttccctttcttgagcaaaaaactaacaaaccttgttgtctcttgtctccttaaaggaagaagtt |
36733976 |
T |
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| Q |
120 |
gactcaatgtgttaccaccaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatcttgtgagccata |
219 |
Q |
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| T |
36733975 |
gactcaatgtgttaccaccaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatcttgtgagccata |
36733876 |
T |
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| Q |
220 |
tgttagataatcaacagctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaaca |
319 |
Q |
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| T |
36733875 |
tgttagataatcaacagctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaaca |
36733776 |
T |
|
| Q |
320 |
caaggcatggaacctaggaaaaggtgtattataggtccatattttgttgaaagtttatgaagtccttggtgaggtattgaaccaataaggtgatgatgtc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36733775 |
caaggcatggaacctaggaaaaggtgtattataggtccatattttgttgaaagtttgtgaagtccttggtgaggtattgaaccaataaggtgaagatgtc |
36733676 |
T |
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| Q |
420 |
ca |
421 |
Q |
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|| |
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| T |
36733675 |
ca |
36733674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 380
Target Start/End: Complemental strand, 25168224 - 25168110
Alignment:
| Q |
266 |
gtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtattataggtccatattttg |
365 |
Q |
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| T |
25168224 |
gtttcgtgagttttaagaaactctttggctatttctggatttgaagttactatacaaggtatagagcctaggaaaagttgaattatgggtccatattgaa |
25168125 |
T |
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| Q |
366 |
ttgaaagtttatgaa |
380 |
Q |
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| T |
25168124 |
ttgaaagcttatgaa |
25168110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 24939620 - 24939511
Alignment:
| Q |
251 |
cggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtatta |
350 |
Q |
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||||||||||| | |||||||||||||||||||||||||| || || ||| | |||| ||| | |||||| | ||| ||||||||||| || |||| |
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| T |
24939620 |
cggttggagaaggaagtttcgtgagttttaagaaactctttggctatttttggacttgaagttactatacaaggaacggagcctaggaaaagttgcatta |
24939521 |
T |
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| Q |
351 |
taggtccata |
360 |
Q |
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| |||||||| |
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| T |
24939520 |
tgggtccata |
24939511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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