View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1893_low_7 (Length: 396)
Name: NF1893_low_7
Description: NF1893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1893_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 34262904 - 34262528
Alignment:
| Q |
1 |
caattcttgttttctcaatcttaggtggaatttgttgtgtgatgtgtgctgttgttgagaatagagtaccaacagttaaagtggtattagcaatggttgc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34262904 |
caattcttgttttctcaatcttaggtggaatttgttgtgtgatgtgtgctgttgttgagaatagagtaccaacagttaaagtggtgttagcaatggttgc |
34262805 |
T |
|
| Q |
101 |
atttttcggggcttgtacggcttataatgtgtttctaatatacattatagagttgtttccgacatgtgtgaggaacacaacaacttcgttggtgagacaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34262804 |
gtttttcggcgcttgtacggcttataatgtgtttctaatatacattatagagttgtttccgacatgtgtgaggaacacaacaacttcgttggtgagacaa |
34262705 |
T |
|
| Q |
201 |
gcgattgtgttcggttgcatattctgtccctttttgatatctgctgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34262704 |
gcgattgtgttcggttgcatattctgtccctttttgatatctgctgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgt |
34262605 |
T |
|
| Q |
301 |
ccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaa |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
34262604 |
ccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcggcaagagaagaaa |
34262528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 35621825 - 35621449
Alignment:
| Q |
1 |
caattcttgttttctcaatcttaggtggaatttgttgtgtgatgtgtgctgttgttgagaatagagtaccaacagttaaagtggtattagcaatggttgc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |||| |||||| || | |||||||| ||||| ||| |||| |
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| T |
35621825 |
caattcttgttttctcaatcttaagtggaatttgttgtgtgatgtgtgttgtcgttgaaaataatgtaccagcaatcaaagtggtgttagctatgattgc |
35621726 |
T |
|
| Q |
101 |
atttttcggggcttgtacggcttataatgtgtttctaatatacattatagagttgtttccgacatgtgtgaggaacacaacaacttcgttggtgagacaa |
200 |
Q |
| |
|
|||||| || ||| ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |
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| T |
35621725 |
attttttggtgctagtacggcttataacgtgtttctcatatacattatagagttgtttccaacatgtgtgagaaacacaacaacgtcgttggtgagacaa |
35621626 |
T |
|
| Q |
201 |
gcgattgtgttcggttgcatattctgtccctttttgatatctgctgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgt |
300 |
Q |
| |
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|| | || || ||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||| ||||| | |
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| T |
35621625 |
gcaacagtttttggttgcatattttgtccctttttgatatctgcagggaggaaaaataatatattttcttatggtatgtttggagttgttataatgttat |
35621526 |
T |
|
| Q |
301 |
ccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaa |
377 |
Q |
| |
|
||||||| | || || | |||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
35621525 |
ccaatttaattttcttctatttgcctgagactaaagggattgttctttgtgatacaatggatcaacaagagaagaaa |
35621449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 14543891 - 14544267
Alignment:
| Q |
1 |
caattcttgttttctcaatcttaggtggaatttgttgtgtgatgtgtgctgttgttgagaatagagtaccaacagttaaagtggtattagcaatggttgc |
100 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||||||||| |||||||||| | ||||||||||||||| | | ||||||||| |||||||||||||| |
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|
| T |
14543891 |
caattcttgtgttttctatcttaggtggaatttgttgtgtgaagtgtgctgttttggagaatagagtaccagctgctaaagtggttttagcaatggttgc |
14543990 |
T |
|
| Q |
101 |
atttttcggggcttgtacggcttataatgtgtttctaatatacattatagagttgtttccgacatgtgtgaggaacacaacaacttcgttggtgagacaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14543991 |
gtttttcggagcttgtacggcttataatgtgtttctcatatacattatagagttgtttccgacatgtgtgaggaacacaacaacgtcgttggtgagacaa |
14544090 |
T |
|
| Q |
201 |
gcgattgtgttcggttgcatattctgtccctttttgatatctgctgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgt |
300 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||| |
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| T |
14544091 |
gctattgtgttcggttgcatattttgtccctttttgatatccgcggggaggaaaaacaatatttactcatatggtgtgtttggagttgttataatgttgt |
14544190 |
T |
|
| Q |
301 |
ccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaa |
377 |
Q |
| |
|
||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
14544191 |
ccaattttacattgttctttttgccagagactatagggattgttctttgtgatacaatggatcaacaagagaagaaa |
14544267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 14579696 - 14579320
Alignment:
| Q |
1 |
caattcttgttttctcaatcttaggtggaatttgttgtgtgatgtgtgctgttgttgagaatagagtaccaacagttaaagtggtattagcaatggttgc |
100 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||||||||||||| | ||||||||||||||| | | ||||||||| |||||||||||||| |
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|
| T |
14579696 |
caattcttgtgttttctatcttaggtggaatttgttgtgtgatgtgtgctgttttggagaatagagtaccagctgctaaagtggttttagcaatggttgc |
14579597 |
T |
|
| Q |
101 |
atttttcggggcttgtacggcttataatgtgtttctaatatacattatagagttgtttccgacatgtgtgaggaacacaacaacttcgttggtgagacaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14579596 |
gtttttcggtgcttgtacggcttataatgtgtttctcatatacattatagagttgtttccgacatgtgtgaggaacacaacaacgtcgttggtgagacaa |
14579497 |
T |
|
| Q |
201 |
gcgattgtgttcggttgcatattctgtccctttttgatatctgctgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgt |
300 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||| |
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|
| T |
14579496 |
gctattgtgttcggttgcatattttgtccctttttgatatcggcggggaggaaaaacaatatttactcatatggtgtgtttggagttgttataatgttgt |
14579397 |
T |
|
| Q |
301 |
ccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaa |
377 |
Q |
| |
|
||||||| |||||||| | |||||| ||||| || |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
14579396 |
ccaattttacattgttctttttgccggagactatgggaattgttctttgtgatacaatggatcaacaagagaagaaa |
14579320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 37577598 - 37577319
Alignment:
| Q |
18 |
atcttaggtggaatttgttgtgtgatgtgtgctgttgttgagaatagagtaccaacagttaaagtggtattagcaatggttgcatttttcggggcttgta |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||| | || || |
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|
| T |
37577598 |
atcttaggtgggatttgttgtgtgatgtgt--tgttgttgagaatagagcaccagcagctaaagtggtgttagcaatggttgcatttttcggcgtttata |
37577501 |
T |
|
| Q |
118 |
cggcttataatgtgtttctaatatacattatagagttgtttccgacatgtgtgaggaacacaacaacttcgttggtgagacaagcgattgtgttcggttg |
217 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| |||| |
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|
| T |
37577500 |
cggcttataatgtgtttata-tatacattatagagttgtttccgacatctgtgaggaacacaacaacttcattggtgagacaagcaattgtgttccgttg |
37577402 |
T |
|
| Q |
218 |
catattctgtccctttttgatatctgctgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgtccaat |
305 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37577401 |
catattctgtccctttttgaca-----tgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgtccaat |
37577319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 102 - 301
Target Start/End: Original strand, 10379001 - 10379200
Alignment:
| Q |
102 |
tttttcggggcttgtacggcttataatgtgtttctaatatacattatagagttgtttccgacatgtgtgaggaacacaacaacttcgttggtgagacaag |
201 |
Q |
| |
|
|||||| | ||||| || ||||||||||||||||| || |||||||| ||| ||||||| ||| ||||||| ||||| ||||| || ||||||||||||| |
|
|
| T |
10379001 |
tttttcagtgcttgcacagcttataatgtgtttctcatttacattattgaggtgtttccaacaagtgtgagaaacactacaacatcattggtgagacaag |
10379100 |
T |
|
| Q |
202 |
cgattgtgttcggttgcatattctgtccctttttgatatctgctgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgtc |
301 |
Q |
| |
|
| ||||| || ||| ||| ||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10379101 |
ctattgtttttggtaacattttcagcccctttttgatatctgctgggaggaaaaatgatattttctcttatggtgtgtttggagttgttatcatgttgtc |
10379200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 120 - 301
Target Start/End: Original strand, 10405005 - 10405186
Alignment:
| Q |
120 |
gcttataatgtgtttctaatatacattatagagttgtttccgacatgtgtgaggaacacaacaacttcgttggtgagacaagcgattgtgttcggttgca |
219 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||| ||||| ||||| || |
|
|
| T |
10405005 |
gcttataatgtgtttctcatttacattatagagttgtttccgacaagtgtgaggaacacgacaacgtcattggtgagacaagctattgttttcggcaaca |
10405104 |
T |
|
| Q |
220 |
tattctgtccctttttgatatctgctgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgtc |
301 |
Q |
| |
|
| || |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
10405105 |
tttttagtccttttttgatatctgctgggaggaaaaatgatgttttctcttatggtgtgtttggggttgttattatgttgtc |
10405186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 279 - 364
Target Start/End: Complemental strand, 37602445 - 37602360
Alignment:
| Q |
279 |
tttggagttgttatcatgttgtccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatca |
364 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37602445 |
tttggagttgctatcatgttgtccaactttacattgttgtgtttgccagagactaaagggattgttctttgtgatacaatggatca |
37602360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 37576542 - 37576469
Alignment:
| Q |
297 |
ttgtccaatttcacattgttgtgtttgccagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaa |
377 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
37576542 |
ttgtccaatttcacattgctgtgtttgccagagactgaa-------ttctttgtggtacaatggatcagcaagagaagaaa |
37576469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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