View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1893_low_8 (Length: 354)
Name: NF1893_low_8
Description: NF1893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1893_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 35206708 - 35207042
Alignment:
| Q |
18 |
aaaagaagtaagggagtgtaatttatatggtctttcttgaacatgtgaaaaagagatagagagtccgtctcaaaaatgatgcctttcgtgcccgtatctc |
117 |
Q |
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| T |
35206708 |
aaaagaagtaaggaagtataatttatatggtctttcttgagcatgtgaaaaagagatagagagtccgtctcaaaaatgatgtctttcgtgcccgtatctc |
35206807 |
T |
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| Q |
118 |
gagcaagcaagctgccattatgaagggcctaagttcctataaaaatgccattgttaaagctcatcttggagt------nnnnnnnnnnnncctctcacaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35206808 |
gagcaagcaagctgccattatgaagggcctaagttcctataaaaatgccattgttaaagctcatcttggagtaaaaaaaaaaaaaaaaaacctctcacaa |
35206907 |
T |
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| Q |
212 |
aattgccattttgatcttgcattatcccaccacaagtccaggaaccagtaagagcataatgagcaccatcaacattcaatttgaggacccatgtccgagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35206908 |
aattgccattttgatcttgcattatcccaccacaagtccaggaaccagtaagagcataatgagcaccatccacattcaatttgaggacccatgtccgagt |
35207007 |
T |
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| Q |
312 |
gtcaagaaaacacgagtgagtttcggtctctccac |
346 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
35207008 |
gtcaagaaaacacgagtgagtttcggtctctccac |
35207042 |
T |
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