View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1893_low_9 (Length: 349)
Name: NF1893_low_9
Description: NF1893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1893_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 49627389 - 49627054
Alignment:
| Q |
9 |
caaaagaaagcctgaatatgcttataagaaggtgcagaattttcttttaatacttgagtttatcttaactttgtttagaattgatttaatcggggaatat |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49627389 |
caaaagaaagcctaaatatgcttataagaaggtgcagaattttcttttaatacttgagtttatcttaactttgtttagaattgatttaatcggggaatat |
49627290 |
T |
|
| Q |
109 |
gtattgattttatgattaaagtattgaacataaagaatgttggatcaattctcgcataagactatttaaaagaatttttgtcattccttcnnnnnnnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49627289 |
gtattgattttatgattaaagtattgaacataaagaatgttggatcaattctcgcataagactatttaaaagaatttttgtcattccttcaaaaaaaaaa |
49627190 |
T |
|
| Q |
209 |
ggaatttttgtcatattcctttgttacaaacaacaaaattaaaaaggagaaaagacaatgtcttccaatttaagtgtcaaaaacaatatgtagattctgg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49627189 |
ggaatttttgtcatattcctttgttacaaacaacaaaattaaaaaggagaaaagacaatgtcttccaatttaagtgtcaaaaacaatatgtagattctgg |
49627090 |
T |
|
| Q |
309 |
cctttatacggggtgatgaatgtagcgggttctgtg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
49627089 |
cctttatacggggtgatgaatgtagcgggttctgtg |
49627054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University