View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18940_high_5 (Length: 267)

Name: NF18940_high_5
Description: NF18940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18940_high_5
NF18940_high_5
[»] scaffold1064 (1 HSPs)
scaffold1064 (87-249)||(2416-2578)
[»] chr4 (5 HSPs)
chr4 (114-252)||(9238485-9238624)
chr4 (87-248)||(5706756-5706917)
chr4 (39-116)||(9238771-9238848)
chr4 (87-245)||(9880874-9881033)
chr4 (55-248)||(26904888-26905076)
[»] chr8 (1 HSPs)
chr8 (88-248)||(37787009-37787169)
[»] chr7 (2 HSPs)
chr7 (86-236)||(296659-296809)
chr7 (74-236)||(30380226-30380388)
[»] chr2 (3 HSPs)
chr2 (70-248)||(38099545-38099723)
chr2 (88-236)||(301926-302074)
chr2 (70-229)||(3461355-3461514)
[»] chr5 (1 HSPs)
chr5 (94-245)||(14233709-14233860)
[»] chr3 (2 HSPs)
chr3 (87-248)||(18641356-18641517)
chr3 (87-200)||(34982935-34983048)
[»] chr6 (2 HSPs)
chr6 (70-164)||(29011197-29011291)
chr6 (88-253)||(28248748-28248913)
[»] scaffold0038 (1 HSPs)
scaffold0038 (88-253)||(48910-49075)
[»] chr1 (2 HSPs)
chr1 (162-236)||(50778524-50778598)
chr1 (66-122)||(44536443-44536499)


Alignment Details
Target: scaffold1064 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 2578 - 2416
Alignment:
Q  87 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2578 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacattgaga 2479  T
Q  187 attgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacat 249  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2478 attgacaacaagtcagccataagccttgtcaagaatcccatctctcatggtagaagcaaacat 2416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 9238624 - 9238485
Alignment:
Q  114 atgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctct-aacactgagaattgacaacaagtcagccataagcct 212  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  9238624 atgtcaagctttgtggttggattcatcaatgaaagagattaagtgtgaagtgatgaagcctcttaacactgagaattgacaacaagtcagccataagtct 9238525  T
Q  213 tgccaagaatcccatctctcatggtagaagcaaacatatt 252  Q
    || |||||||||||||||||||||||||||||||||||||    
T  9238524 tgtcaagaatcccatctctcatggtagaagcaaacatatt 9238485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 5706756 - 5706917
Alignment:
Q  87 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga 186  Q
    |||||||||| |||| ||||||||||| |||||||| || ||| |||||||||  ||||||||||| |||||||||||||| |||||||| |||||||      
T  5706756 tgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactgaag 5706855  T
Q  187 attgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaaca 248  Q
    ||||||||||| ||| ||||||| ||||| |||| |||  |||||||||| ||||| |||||    
T  5706856 attgacaacaaatcatccataagtcttgctaagagtcctgtctctcatggcagaagtaaaca 5706917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 9238848 - 9238771
Alignment:
Q  39 caaacttacaaaaagccaacctgttattgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9238848 caaacttacaaaaagccaacctgttattgcgctctcatcatgtgaatctgagtacattgcaggtacatttgctacatg 9238771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 87 - 245
Target Start/End: Original strand, 9880874 - 9881033
Alignment:
Q  87 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga 186  Q
    |||||| |||| ||| |||||| |||| |||||| |||||||||| |||||||  |||||||||||||| |||||| |  ||||||||||||| || | |    
T  9880874 tgagtatattgtaggaacattttctacttgtcaaactttgtggttagattcagtgatgaaagagcttaaatgtgaaattgtgaagcctctaaccctcata 9880973  T
Q  187 attgacaac-aagtcagccataagccttgccaagaatcccatctctcatggtagaagcaa 245  Q
    ||||||||| || ||  ||||||| ||||| |||||||||||||| ||||||||||||||    
T  9880974 attgacaacaaaatctaccataagtcttgctaagaatcccatctcacatggtagaagcaa 9881033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 55 - 248
Target Start/End: Original strand, 26904888 - 26905076
Alignment:
Q  55 caacctgttattgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagctta 154  Q
    |||||||||| ||| || ||||| ||| ||  |||||| |||||| ||| ||||| ||||||||||||  | |||||||||||||  ||||||||| | |    
T  26904888 caacctgttagtgcactttcatcctgtgaagttgagtaaattgcaagtatatttgatacatgtcaagccat-tggttggattcagtgatgaaagagatca 26904986  T
Q  155 agtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaaca 248  Q
    |||| |||    |||| |||||||||||||  ||||||||||| ||||||||||| ||||| ||||| || || |||||||||| |||||||||    
T  26904987 agtgcgaa----tgaaacctctaacactgaagattgacaacaaatcagccataagtcttgctaagaaccctatttctcatggtataagcaaaca 26905076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 37787169 - 37787009
Alignment:
Q  88 gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa 187  Q
    |||||||||||||| ||||||||||| |||||||| || ||| || ||||||  ||||| || |||||||||||||||||||||||||||||||||| ||    
T  37787169 gagtacattgcaggaacatttgctacttgtcaagcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaa 37787070  T
Q  188 ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaaca 248  Q
    |||||||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||| |||||    
T  37787069 ttgacaacaaatcagccataagtcttgcaaagaatccaatctcacatggcagaagtaaaca 37787009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 296659 - 296809
Alignment:
Q  86 ctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgag 185  Q
    |||||||||||||||| ||||||||||| | ||||||  | ||| |||||||||  || |||||||| ||||||||||||||||||||||| |||||||     
T  296659 ctgagtacattgcaggaacatttgctacttttcaagcactatggctggattcagtgataaaagagctcaagtgtgaagtgatgaagcctctgacactgaa 296758  T
Q  186 aattgacaacaagtcagccataagccttgccaagaatcccatctctcatgg 236  Q
     ||||||||||| ||||||||||| ||||| ||||||||| ||||||||||    
T  296759 gattgacaacaaatcagccataagtcttgctaagaatcccgtctctcatgg 296809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 74 - 236
Target Start/End: Original strand, 30380226 - 30380388
Alignment:
Q  74 catcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcc 173  Q
    |||||||| ||  ||| ||||||| ||| || |||||||| ||||||||| | || ||||||||||  ||||||||||| ||||||||||||||||| ||    
T  30380226 catcatgtgaagttgaatacattgaaggaacttttgctacttgtcaagctctatgattggattcagtgatgaaagagctcaagtgtgaagtgatgaaacc 30380325  T
Q  174 tctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatgg 236  Q
    ||||||||||   ||||||||||| ||||||||||| |||||  ||||||| ||||| |||||    
T  30380326 tctaacactggagattgacaacaaatcagccataagtcttgcttagaatccaatctcacatgg 30380388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 248
Target Start/End: Complemental strand, 38099723 - 38099545
Alignment:
Q  70 ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatga 169  Q
    ||||||| |||| ||  |||||||||||||||| ||||||| | |||||||||| ||| | ||||||||   ||||||||||| ||||||||||||||||    
T  38099723 ctctcattatgtgaagttgagtacattgcaggtgcatttgcaatatgtcaagctctgttgctggattcaatgatgaaagagctcaagtgtgaagtgatga 38099624  T
Q  170 agcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaaca 248  Q
    | |||||||||||||  ||||||||||| ||| ||||||| ||||| | |||||| || ||||||||||||| ||||||    
T  38099623 aacctctaacactgaagattgacaacaaatcaaccataagtcttgctaggaatcctatttctcatggtagaatcaaaca 38099545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 301926 - 302074
Alignment:
Q  88 gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa 187  Q
    |||||||||||||| ||||||||||| |||||||| || ||| || ||||||  ||||| || |||||||||||||||||||||||||||||||||| ||    
T  301926 gagtacattgcaggaacatttgctacttgtcaagcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaa 302025  T
Q  188 ttgacaacaagtcagccataagccttgccaagaatcccatctctcatgg 236  Q
    |||||||||| ||||||| ||| ||||| |||||||  ||||| |||||    
T  302026 ttgacaacaaatcagccacaagtcttgcaaagaatctaatctcacatgg 302074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 229
Target Start/End: Original strand, 3461355 - 3461514
Alignment:
Q  70 ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatga 169  Q
    |||||||||||| ||   ||||||||  | ||||| |||||||| ||||||||  | |||||||||||||  ||||| ||  ||||||||||||||||||    
T  3461355 ctctcatcatgtgaagaagagtacataactggtacttttgctacttgtcaagcactatggttggattcagtgatgaaggaatttaagtgtgaagtgatga 3461454  T
Q  170 agcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatct 229  Q
    ||||||||||||||| |||||| || || ||||||||||| ||||  |||||||| ||||    
T  3461455 agcctctaacactgaaaattgataataaatcagccataagtcttgtaaagaatccaatct 3461514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 14233709 - 14233860
Alignment:
Q  94 attgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgaca 193  Q
    |||||| | ||||||||||| ||||||||| ||||||| |||||||  ||||| |||||||| ||||||||  ||||||||||||| || ||||||||||    
T  14233709 attgcaagaacatttgctacttgtcaagctatgtggttagattcagtgatgaaggagcttaaatgtgaagtagtgaagcctctaaccctcagaattgaca 14233808  T
Q  194 acaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaa 245  Q
    |||| ||  ||||||||||||| |||||||| ||||| ||||||||||||||    
T  14233809 acaaatcttccataagccttgctaagaatcctatctcacatggtagaagcaa 14233860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 18641517 - 18641356
Alignment:
Q  87 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga 186  Q
    |||||||||| |||| ||||||||||| |||||||| || ||| |||||||||  ||||||||||| |||||||||||||| |||||||| |||||||      
T  18641517 tgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactgaag 18641418  T
Q  187 attgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaaca 248  Q
    ||||||||||| ||| ||||||| ||||| |||| |||  |||||||||| ||||| |||||    
T  18641417 attgacaacaaatcatccataagtcttgctaagagtcctgtctctcatggcagaagtaaaca 18641356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 34982935 - 34983048
Alignment:
Q  87 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga 186  Q
    |||||| |||||| | ||||||||||| ||||||| ||| |||||||| | ||| ||||||||||| |||||||||||| ||||||||||||||| ||      
T  34982935 tgagtatattgcatgaacatttgctacttgtcaagttttatggttggaattagcgatgaaagagctcaagtgtgaagtggtgaagcctctaacacagatg 34983034  T
Q  187 attgacaacaagtc 200  Q
    |||||||| |||||    
T  34983035 attgacaataagtc 34983048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 29011291 - 29011197
Alignment:
Q  70 ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagt 164  Q
    |||||||| ||| || ||||||| |||||||| | |||||||||||||||||||||||||||||||||||  ||||| || || |||||||||||    
T  29011291 ctctcatcttgtgaagctgagtatattgcaggaatatttgctacatgtcaagctttgtggttggattcagtgatgaatgaactcaagtgtgaagt 29011197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 253
Target Start/End: Original strand, 28248748 - 28248913
Alignment:
Q  88 gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa 187  Q
    |||||||| || || || |||||||| || ||| | || ||| |||||| ||  ||||||||||| |||||||||||| | |||||||| |||||||  |    
T  28248748 gagtacatagctggaacttttgctacttgccaaacattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactgaaga 28248847  T
Q  188 ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattt 253  Q
    |||||||||| |||| |||||| ||||| ||||||    |||||||||| ||||| ||||| ||||    
T  28248848 ttgacaacaaatcaggcataagtcttgctaagaatattgtctctcatggcagaagtaaacacattt 28248913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 253
Target Start/End: Original strand, 48910 - 49075
Alignment:
Q  88 gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa 187  Q
    |||||||| || || || |||||||| || ||| | || ||| |||||| ||  ||||||||||| |||||||||||| | |||||||| |||||||  |    
T  48910 gagtacatagctggaacttttgctacttgccaaacattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactgaaga 49009  T
Q  188 ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattt 253  Q
    |||||||||| |||| |||||| ||||| ||||||    |||||||||| ||||| ||||| ||||    
T  49010 ttgacaacaaatcaggcataagtcttgctaagaatattgtctctcatggcagaagtaaacacattt 49075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 50778598 - 50778524
Alignment:
Q  162 agtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatgg 236  Q
    ||||||||||||||||||||||| |||||| || || ||||||||||| ||||| |||||||| ||||| |||||    
T  50778598 agtgatgaagcctctaacactgaaaattgataataaatcagccataagtcttgcaaagaatccaatctcacatgg 50778524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 44536499 - 44536443
Alignment:
Q  66 tgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagc 122  Q
    ||||||||||||  ||||| | |||||||||||||  ||||||||||| ||||||||    
T  44536499 tgcgctctcatccagtaaaccagagtacattgcagaaacatttgctacttgtcaagc 44536443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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