View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18940_high_8 (Length: 243)

Name: NF18940_high_8
Description: NF18940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18940_high_8
NF18940_high_8
[»] chr4 (2 HSPs)
chr4 (141-228)||(30094867-30094954)
chr4 (26-67)||(30095026-30095067)
[»] chr5 (1 HSPs)
chr5 (167-228)||(1251748-1251809)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 30094954 - 30094867
Alignment:
Q  141 ggaatcagggaggtggaggaggtaacaatgaagaagaaaacaagtggccaccatggttgcaaccacttcttcaaacaagtttctttgt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30094954 ggaatcagggaggtggaggaggtaacaatgaagaagaaaacaagtggccaccatggttgcaaccacttcttcaaacaagtttctttgt 30094867  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 30095067 - 30095026
Alignment:
Q  26 tcatcataattcaatcatggttagtgtcatttacaaataccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30095067 tcatcataattcaatcatggttagtgtcatttacaaataccc 30095026  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 1251748 - 1251809
Alignment:
Q  167 aatgaagaagaaaacaagtggccaccatggttgcaaccacttcttcaaacaagtttctttgt 228  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  1251748 aatgaagaagaaatcaagtggccaccatggttgcaaccacttctccaagcaaggttctttgt 1251809  T

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