View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18940_low_1 (Length: 588)
Name: NF18940_low_1
Description: NF18940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18940_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 17715687 - 17715524
Alignment:
| Q |
38 |
taatggaactataaaaaggatgccaagtttgaccaggcaaaatgcaaat-gggcaacttgattgagttgacagagagaagtcttcttagcttattacata |
136 |
Q |
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| T |
17715687 |
taatggaactataaaaaggatgccaagtttgaccaggcaaaatgcaaatggggcaacttgattgagttgacagagagaagtc-tcttaggttatt----- |
17715594 |
T |
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| Q |
137 |
cacatacacgtttcatcatgtcatgccttctttgacacg---aacatgggtcaatgcaaaagaaatcaata |
204 |
Q |
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| T |
17715593 |
-acatacacgtttcttcatggcatgccttctttgacacgaacaacatgggtcaatgcaaaaggaatcaata |
17715524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 342 - 420
Target Start/End: Complemental strand, 17715536 - 17715459
Alignment:
| Q |
342 |
aaagaaatcaatatttatctattaggaaaagtacaatcatcaggttttttaaatatagtattagattatccttaaaaaa |
420 |
Q |
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| T |
17715536 |
aaaggaatcaatatttatctattaggaaaagtataatcatcatgttttttaaatatagtattagattat-cttaaaaaa |
17715459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 17714955 - 17714892
Alignment:
| Q |
417 |
aaaacactatagtattagattagattagtttgtctttttaataaacttttaataagtttcttaa |
480 |
Q |
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| T |
17714955 |
aaaaaactatagtattagattagattagtatgtttctttaataaatttttaataagttccttaa |
17714892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 334
Target Start/End: Complemental strand, 43196360 - 43196321
Alignment:
| Q |
295 |
atataatatgcattattttttaccaagtgagctaaattca |
334 |
Q |
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| T |
43196360 |
atatattatgcattattttttatcaagtgagctaaattca |
43196321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 50676843 - 50676971
Alignment:
| Q |
215 |
gtcaaatagtttaatggtcagagaaataaaccttaaaagtaaataagtgatgtattccggattggaaccctaatctctacatataatatgcattattttt |
314 |
Q |
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| T |
50676843 |
gtcaagtagtctagtggttagagaaattcaccttaaaggtgaataagtggggtgttcggggttcgaaccccaacccctacatataatatgtattgtccct |
50676942 |
T |
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| Q |
315 |
taccaagtgagctaaattcatgaagacaa |
343 |
Q |
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| T |
50676943 |
taccaagtgagttaaactcatggagacaa |
50676971 |
T |
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