View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18940_low_2 (Length: 449)
Name: NF18940_low_2
Description: NF18940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18940_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 592251 - 592670
Alignment:
| Q |
1 |
agagcttgtcacgaacttcacgacccaaaaggcatctactggttgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592251 |
agagcttgtcacgaacttcacgacccaaaaggcatctactggctgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatcc |
592350 |
T |
|
| Q |
101 |
ccactttgagaaatagtcctgtaaatttggttcatgtttcagaaaacaacacagccnnnnnnngttgcaagagaggaatttacaattatcaacataaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
592351 |
ccactttgagaaatagtcctgtaaatttggttcatgtttgagaaaacaacacagccaaagaaagctgcaagagaggaatttacaattatcaacataaagt |
592450 |
T |
|
| Q |
201 |
aaccaacaatcaagtctcagaagtttgataccattattataccatgatcatgacaagtcgaaacagaattcaagagcttctccagcttatcaaaatatga |
300 |
Q |
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|
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592451 |
aacaaacaatcaagtctcagaagtttgataccattattataccatgatcatgtcaagtcgaaacagaattcaagagcttctccagcttatcaaaatatga |
592550 |
T |
|
| Q |
301 |
taatgaattcaagttgaagtgtaaaattttattttcaattacgttaagaatttggcttcatgaacagtgtggagttgataaccattgggatgcaaacatg |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592551 |
taatgaattcaagttgcagtgtaaaattttattttcaattacgttaagaatttggcttcatgaacagtgtggagttgataaccattgggatgcaaacatg |
592650 |
T |
|
| Q |
401 |
actgctgaaattgtgataaa |
420 |
Q |
| |
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|||||||| ||||||||||| |
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| T |
592651 |
actgctgacattgtgataaa |
592670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 580176 - 579785
Alignment:
| Q |
1 |
agagcttgtcacgaacttcacgacccaaaaggcatctactggttgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580176 |
agagcttgtcacgaacttcacgacccaagagacatctactggctgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatcc |
580077 |
T |
|
| Q |
101 |
ccactttgagaaatagtcctgtaaatttggttcatgtttcagaaaacaacacagccnnnnnnngttgcaagagaggaatttacaattatcaacataaagt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
580076 |
ccactttgagaaatagtcctgtaaatttggttcatgtttgagaaat-aacacagtgaaagaaagttgcaagagaggaatttacaattatcaacataaaga |
579978 |
T |
|
| Q |
201 |
aaccaacaatcaagtctcagaagtttgataccattattataccatgatcatgacaagtcgaaacagaattcaagagcttctccagcttatcaaaatatga |
300 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
579977 |
aacaaacaatcaagtctcagaggtttgataccattattataccatggtcatgtcaagtccaaacagaattcaagagcttctccagcttatcaaaatatga |
579878 |
T |
|
| Q |
301 |
taatgaattcaagttgaagtgtaaaattttattttcaattacgttaagaatttggcttcatgaacagtgtgga-gttgataaccattgggatgcaaacat |
399 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| || |||||||||| ||||||||||| |
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|
| T |
579877 |
taatgaattcaagttgcagtgtaaaattttattttca--------aagaatttggcttcatgaaaagtgtggaggtggataaccatt-agatgcaaacat |
579787 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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