View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18940_low_3 (Length: 316)
Name: NF18940_low_3
Description: NF18940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18940_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 55123739 - 55124028
Alignment:
| Q |
19 |
agtgttgtgtaactgagccttgaagtttttgtactgagaaaaacataacaagctaatgacgatgccaaataccatgagcaagtggaatgggggtgcagaa |
118 |
Q |
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| T |
55123739 |
agtgttgtgtaactgagccttgaagtttttgtactgagaaaaacataacaagctaatgacgatgccaaataccatgaacaagtggaatgggggtgcagaa |
55123838 |
T |
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| Q |
119 |
acagaagccatgctctttcttctccatccctgtttcaattctgtaccccttctcttagactccattctgcttcttttcttttttaatttgttttactcac |
218 |
Q |
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| T |
55123839 |
acagaagccatgctctttcctttccatccctgtttcaattctgtaccccttctcttagactccattctgtttcttttcttttttaatttgttttactcac |
55123938 |
T |
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| Q |
219 |
ccacctcctgcaaattatatttgttgcttaatt-----gatgagatgagcttcgttacttctctctcatattagtttggttttggcatattctt |
307 |
Q |
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| T |
55123939 |
ccacctcctgcaaattatatttgttgcttaattgatgagatgagatgagcttcgttact----tctcatattagtttggttttggcatattctt |
55124028 |
T |
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