View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18940_low_7 (Length: 244)
Name: NF18940_low_7
Description: NF18940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18940_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 54691209 - 54690981
Alignment:
| Q |
16 |
gtttgattcggttttttggttttctgaagtaggcacaatattcgatttggttcgggnnnnnnnaacaatcctgactatcaattacttgcacggacatctt |
115 |
Q |
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| T |
54691209 |
gtttgattcggttttttggttttctgaagtaggcacaatattcgatttggttcgggtttttttaacaatcctgactatcaattacttgcacggacatctt |
54691110 |
T |
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| Q |
116 |
ctgagtgtatatagttattatgagacattaggaatctcatgttaattaaacacgtatgaatcaatgaggctaactaatcgagatttggaatatctaaaca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54691109 |
ctgagtgtatatagttattatgagacattaggaatctcatgttaattaaacacgtatgaatcaatgaggctaactaatcaagatttggaatatctaaaca |
54691010 |
T |
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| Q |
216 |
ttattgcatagattgtagagaagtgtctc |
244 |
Q |
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|||||| ||||||| |||||||||||||| |
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| T |
54691009 |
ttattgtatagattatagagaagtgtctc |
54690981 |
T |
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