View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18941_high_11 (Length: 243)
Name: NF18941_high_11
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18941_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4710566 - 4710792
Alignment:
| Q |
1 |
atcaatatctcgaccttgaactatcagtgttgtaataataagcatcttccttagttgaaaaactacatcatataccagaccaattatttacgtgatactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4710566 |
atcaatatctcgaccttgaactatcagtgttgtaataataagcatcttccttagttgaaaaactacatcatataccagaccaattatttacgtgatactt |
4710665 |
T |
|
| Q |
101 |
cccttttttcttaagtgcagagacctcagtatcagaagtggtaatagttcccatattaaacgaaaaatcttaggtgattcaaataatgaatcatgaccgg |
200 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4710666 |
ccctttttttttaagtacagagacctcagtatcagaagtggtaatagttcccatattaaacgaaaaatcttaggtgattcaaataatgaatcatgactgg |
4710765 |
T |
|
| Q |
201 |
aatcaacattttttaccaaatagattc |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
4710766 |
aatcaacattttttaccaaatagattc |
4710792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 12340171 - 12340316
Alignment:
| Q |
6 |
tatctcgaccttgaactatcagtg--ttgtaa-taataagcatcttccttagttgaaaaactacatcatataccagaccaattatttacgtgatacttcc |
102 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || || ||||||||| | || ||||||||||||| |||| |||||||||||| |||||||| ||| |
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| T |
12340171 |
tatctcgaccttgaactatcagagcgttgtaaatattaggcatcttccctggtggaaaaactacatcgagtaccggaccaattatttgcgtgatacgtcc |
12340270 |
T |
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| Q |
103 |
-----cttttttcttaagtgcagagacctcagtatcagaagtggta |
143 |
Q |
| |
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| T |
12340271 |
tatattttttttttcaagtccagaaacctcagtatccgaagtggta |
12340316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 48938950 - 48939095
Alignment:
| Q |
6 |
tatctcgaccttgaactatcagtg--ttgtaa-taataagcatcttccttagttgaaaaactacatcatataccagaccaattatttacgtgatacttcc |
102 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || || ||||||||| | || ||||||||||||| |||| |||||||||||| |||||||| ||| |
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| T |
48938950 |
tatctcgaccttgaactatcagagcgttgtaaatattaggcatcttccctggtggaaaaactacatcgagtaccggaccaattatttgcgtgatacgtcc |
48939049 |
T |
|
| Q |
103 |
-----cttttttcttaagtgcagagacctcagtatcagaagtggta |
143 |
Q |
| |
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|||||| | |||| |||| ||||||||||| ||||||||| |
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| T |
48939050 |
tatattttttttttcaagtccagaaacctcagtatccgaagtggta |
48939095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 26158918 - 26158823
Alignment:
| Q |
6 |
tatctcgaccttgaactatcagtg--ttgtaa-taataagcatcttccttagttgaaaaactacatcatataccagaccaattatttacgtgatac |
98 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || || ||||||||| | || ||||||||||||| |||| |||||||||||| |||||||| |
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| T |
26158918 |
tatctcgaccttgaactatcagagcgttgtaaatattaggcatcttccctggtggaaaaactacatcgagtaccggaccaattatttgcgtgatac |
26158823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 6948750 - 6948605
Alignment:
| Q |
6 |
tatctcgaccttgaactatc--agtgttgt-aataataagcatcttccttagttgaaaaactacatcatataccagaccaattatttacgtgatacttcc |
102 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||| || ||||||||| | || ||||||||||||| |||| ||||||||||| |||||||| ||| |
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| T |
6948750 |
tatctcgaccttgaactatcagagcgttgtaaatattaggcatcttccctggtggaaaaactacatcgagtaccgaaccaattatttgcgtgatacgtcc |
6948651 |
T |
|
| Q |
103 |
-----cttttttcttaagtgcagagacctcagtatcagaagtggta |
143 |
Q |
| |
|
|||||| | |||| |||| ||||||||||| ||||||||| |
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|
| T |
6948650 |
tatattttttttttcaagtccagaaacctcagtatccgaagtggta |
6948605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 19679178 - 19679083
Alignment:
| Q |
6 |
tatctcgaccttgaactatcagtg--ttgtaa-taataagcatcttccttagttgaaaaactacatcatataccagaccaattatttacgtgatac |
98 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || || ||||||||| | || |||||||||||||| |||| |||||||||||| |||||||| |
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|
| T |
19679178 |
tatctcgaccttgaactatcagagcgttgtaaatattaggcatcttccctggtggaaaaactacatcaagtaccggaccaattatttgcgtgatac |
19679083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 18189339 - 18189484
Alignment:
| Q |
6 |
tatctcgaccttgaactatcagtg--ttgtaa-taataagcatcttccttagttgaaaaactacatcatataccagaccaattatttacgtgatacttcc |
102 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || || ||||||||| | || ||||||||||||| |||| |||||||||||| |||||||| ||| |
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| T |
18189339 |
tatctcgaccttgaactatcagagcgttgtaaatattaggcatcttccctggtggaaaaactacatcgagtaccggaccaattatttgcgtgatacgtcc |
18189438 |
T |
|
| Q |
103 |
-----cttttttcttaagtgcagagacctcagtatcagaagtggta |
143 |
Q |
| |
|
|||||| | |||| |||| ||||||||||| ||||||||| |
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|
| T |
18189439 |
tatattttttttttcaagtccagaaacctcagtatccgaagtggta |
18189484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 2550138 - 2550233
Alignment:
| Q |
6 |
tatctcgaccttgaactatc--agtgttgt-aataataagcatcttccttagttgaaaaactacatcatataccagaccaattatttacgtgatac |
98 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||| || ||||||||| | || ||||||||||||| |||| |||||||||||| | |||||| |
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|
| T |
2550138 |
tatctcgaccttgaactatcagagcgttgtaaatattaggcatcttccctggtggaaaaactacatcgagtaccggaccaattatttgcatgatac |
2550233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 13239590 - 13239445
Alignment:
| Q |
6 |
tatctcgaccttgaactatcagtg--ttgtaa-taataagcatcttccttagttgaaaaactacatcatataccagaccaattatttacgtgatacttcc |
102 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || || ||||||||| | || ||||||||||||| |||| |||||||||||| |||||||| ||| |
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|
| T |
13239590 |
tatctcgaccttgaactatcagagcgttgtaaatattaggcatcttccctggtggaaaaactacatcgagtaccggaccaattatttgcgtgatacgtcc |
13239491 |
T |
|
| Q |
103 |
-----cttttttcttaagtgcagagacctcagtatcagaagtggta |
143 |
Q |
| |
|
|||||| | |||| |||| ||||||||||| ||||||||| |
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|
| T |
13239490 |
tatattttttttttcaagtccagaaacctcagtatccgaagtggta |
13239445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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